Non-Coding RNA Search

Pig2-6L04

Sequence:


               
               ACAACGGGGTGGGTTTTGTGAGGCCTATGCTGCGTTTGTAAACGTTCCTGTTTGGGGTCA
GAAATAACCAGCTATCCCAGGACGCGACCCAGACCGTGAGGGCCGACCGGCCGACCTTGG
ACAGGATGGAATGAGCTGGAGCGGTGGCCCACCCCTTCCAGGGGAGGGGTCCGACGGCCG
CTCTGCACGGATTCTTCCAGCCAGTGCCAGGGCAGCCCCACCAGCAAAGACCTCGGGACG
TCCCAGGAGGAAAGATTAGCATTTGGTGGCTAAACTTAGCTCCCTGGATAAGCTGCCTGT
AGAAGGAAGTGAAGACGGACTTGGAGGGAGGGGGGTTGGGGGAGACTTAAAGGGACAGGG
ACAGGTTTGAAAAGATGGTGGTGGTGGGACTAGTGGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACGGGGTGGGTTTTGTGAGGCCTATGCTGCGTTTGTAAACGTTCCTGTTTGGGGTCA
GAAATAACCAGCTATCCCAGGACGCGACCCAGACCGTGAGGGCCGACCGGCCGACCTTGG
ACAGGATGGAATGAGCTGGAGCGGTGGCCCACCCCTTCCAGGGGAGGGGTCCGACGGCCG
CTCTGCACGGATTCTTCCAGCCAGTGCCAGGGCAGCCCCACCAGCAAAGACCTCGGGACG
TCCCAGGAGGAAAGATTAGCATTTGGTGGCTAAACTTAGCTCCCTGGATAAGCTGCCTGT
AGAAGGAAGTGAAGACGGACTTGGAGGGAGGGGGGTTGGGGGAGACTTAAAGGGACAGGG
ACAGGTTTGAAAAGATGGTGGTGGTGGGACTAGTGGAATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               209-325, - strand, RNAz p=0.943026
               

               
               254-349, - strand, RNAz p=0.888627

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-325, - strand, RNAz p=0.943026
               

               
               254-349, - strand, RNAz p=0.888627

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               205-396, gnl|bosTau2|chr25 (38935816-38936002)
               

               
               205-396, gnl|canFam2|chr6 (17464773-17464233)
               

               
               205-396, gnl|hg17|chr7 (2573439-2573936)
               

               
               205-396, gnl|Hg17|chr7 (2573712-2573501)
               

               
               205-396, gnl|loxAfr1|scaffold_21665 (6-537)
               

               
               205-396, gnl|panTro1|chr6 (2778881-2779377)
               

               
               205-396, gnl|rheMac2|chr3 (40762046-40762546)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               205-396, gnl|bosTau2|chr25 (38935816-38936002)
               

               
               205-396, gnl|canFam2|chr6 (17464773-17464233)
               

               
               205-396, gnl|hg17|chr7 (2573439-2573936)
               

               
               205-396, gnl|Hg17|chr7 (2573712-2573501)
               

               
               205-396, gnl|loxAfr1|scaffold_21665 (6-537)
               

               
               205-396, gnl|panTro1|chr6 (2778881-2779377)
               

               
               205-396, gnl|rheMac2|chr3 (40762046-40762546)

	209-325, - strand, RNAz p=0.943026
	254-349, - strand, RNAz p=0.888627

	205-396, gnl\|bosTau2\|chr25 (38935816-38936002)
	205-396, gnl\|canFam2\|chr6 (17464773-17464233)
	205-396, gnl\|hg17\|chr7 (2573439-2573936)
	205-396, gnl\|Hg17\|chr7 (2573712-2573501)
	205-396, gnl\|loxAfr1\|scaffold_21665 (6-537)
	205-396, gnl\|panTro1\|chr6 (2778881-2779377)
	205-396, gnl\|rheMac2\|chr3 (40762046-40762546)