Non-Coding RNA Search

Pig2-6O12

Sequence:


               
               TTCCCGCGGGCACCTTCCTCATCCGCGACAGCTCGGACCAGCGACACTTCTTCACGCTCA
GCGTCAAGACCCAGTCGGGGACCAAGAACCTGCGCATCCAGTGCGAGGGGGGCAGCTTCT
CGCTGCAGAGTGACCCCCGCAGCACGCAGCCCGTGCCCCGCTTCGACTGCGTGCTCAAGC
TGGTGCATCACTACATGCCACCCTCCGGCGCCCCCTCCTTCTCCTCGCCTCCGACTGAAC
CCTCCTCGTCGCCCTCCTCCGAGGTGCCCGAGCAGCCGCCCGCCCAGCCGCTCCCGGGGG
GCCCCCCTAGAAGAGCCTATTACATCTACTCCGGGGGCGAGAAGATCCCTCTGGTGTTGA
GCCGGCCCCTCTCCTCCAACGTGGCCACTCTCCAGCATCTCTGTCGGAAAACAGTCAACG
GCCACCTGGACTCCTATGAGAAAGTCACCCAGCTGCCTGGGCCCATTCGGGAGTTCCTGG
ACCAGTACGATGCCCCACTTTAAGGAGCAAAGGGCAGAGGTCGGGGCGAGGGGCCAGGGT
CCCCTCTCCTCCGTGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCGCGGGCACCTTCCTCATCCGCGACAGCTCGGACCAGCGACACTTCTTCACGCTCA
GCGTCAAGACCCAGTCGGGGACCAAGAACCTGCGCATCCAGTGCGAGGGGGGCAGCTTCT
CGCTGCAGAGTGACCCCCGCAGCACGCAGCCCGTGCCCCGCTTCGACTGCGTGCTCAAGC
TGGTGCATCACTACATGCCACCCTCCGGCGCCCCCTCCTTCTCCTCGCCTCCGACTGAAC
CCTCCTCGTCGCCCTCCTCCGAGGTGCCCGAGCAGCCGCCCGCCCAGCCGCTCCCGGGGG
GCCCCCCTAGAAGAGCCTATTACATCTACTCCGGGGGCGAGAAGATCCCTCTGGTGTTGA
GCCGGCCCCTCTCCTCCAACGTGGCCACTCTCCAGCATCTCTGTCGGAAAACAGTCAACG
GCCACCTGGACTCCTATGAGAAAGTCACCCAGCTGCCTGGGCCCATTCGGGAGTTCCTGG
ACCAGTACGATGCCCCACTTTAAGGAGCAAAGGGCAGAGGTCGGGGCGAGGGGCCAGGGT
CCCCTCTCCTCCGTGGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5S3P3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5S3P3_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               203-322, - strand, RNAz p=0.737201
               

               
               443-559, + strand, RNAz p=0.864374

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-322, - strand, RNAz p=0.737201
               

               
               443-559, + strand, RNAz p=0.864374

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-559, gnl|bosTau2|chr19 (45777931-45777373)
               

               
               3-559, gnl|Hg17|chr17 (73866582-73866030)
               

               
               3-559, gnl|Mm7|chr11 (118077086-118076541)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-559, gnl|bosTau2|chr19 (45777931-45777373)
               

               
               3-559, gnl|Hg17|chr17 (73866582-73866030)
               

               
               3-559, gnl|Mm7|chr11 (118077086-118076541)

	203-322, - strand, RNAz p=0.737201
	443-559, + strand, RNAz p=0.864374

	3-559, gnl\|bosTau2\|chr19 (45777931-45777373)
	3-559, gnl\|Hg17\|chr17 (73866582-73866030)
	3-559, gnl\|Mm7\|chr11 (118077086-118076541)