Pig2-6P03
|
TCGGAGCGTTCAGGGGATGAACCGCCTCCGGAGTAGACCCCGTGCAGGCGACTGGGCAAA
GGTAAAAGCCCAGGGACAGGCCTCATAGGAGTCTGGCTGTGGCTTCGTACCGGCTCCCTA
ACGCCTCAACCCTCCCCCGCTCCTTGAAGTGAAACTCGTTGGGTTATTACAGAACATTGA
GTAGACTTCCCTGTGCTATACGGTGCCTGGTCCTGCCTCCAGCCGTCCTCTGGACCAGGC
AGTGTGGAAAAGAAGCATTTGCTGGGAAACCATGACTAGGACGGAAAAGGGAAAGACCTT
TCTCCCCCACCATTTCCATCAGTCACTCCCCCCACAGTTGGGAAGGGGCATGATTTTCTC
CCACTTAAAACCAAGAAGCAAGTTGGAATGTACCTCTGTTTCCAGTGTGCCTCCAGTCTT
C
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCGGAGCGTTCAGGGGATGAACCGCCTCCGGAGTAGACCCCGTGCAGGCGACTGGGCAAA
GGTAAAAGCCCAGGGACAGGCCTCATAGGAGTCTGGCTGTGGCTTCGTACCGGCTCCCTA
ACGCCTCAACCCTCCCCCGCTCCTTGAAGTGAAACTCGTTGGGTTATTACAGAACATTGA
GTAGACTTCCCTGTGCTATACGGTGCCTGGTCCTGCCTCCAGCCGTCCTCTGGACCAGGC
AGTGTGGAAAAGAAGCATTTGCTGGGAAACCATGACTAGGACGGAAAAGGGAAAGACCTT
TCTCCCCCACCATTTCCATCAGTCACTCCCCCCACAGTTGGGAAGGGGCATGATTTTCTC
CCACTTAAAACCAAGAAGCAAGTTGGAATGTACCTCTGTTTCCAGTGTGCCTCCAGTCTT
C
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
266-361, - strand, RNAmicro p=0.99999 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
266-361, - strand, RNAmicro p=0.99999 |
|
204-421, gnl|bosTau2|chr10 (60124889-60124672) |
|
204-421, gnl|canFam2|chr8 (49880915-49881284) |
|
204-421, gnl|echTel1|scaffold_71366 (7018-6653) |
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204-421, gnl|hg17|chr14 (73059345-73059713) |
|
204-421, gnl|Hg17|chr14 (73059680-73059460) |
|
204-421, gnl|loxAfr1|scaffold_145731 (137-497) |
|
204-421, gnl|mm7|chr12 (81976254-81976598) |
|
204-421, gnl|Mm7|chr12 (81976585-81976372) |
|
204-421, gnl|monDom2|scaffold_8 (61568460-61568077) |
|
204-421, gnl|oryCun1|scaffold_141557 (5620-5280) |
|
204-421, gnl|panTro1|chr15 (72843908-72844276) |
|
204-421, gnl|rheMac2|chr7 (136657269-136657637) |
|
204-421, gnl|rn3|chr6 (108013552-108013896) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
204-421, gnl|bosTau2|chr10 (60124889-60124672) |
|
204-421, gnl|canFam2|chr8 (49880915-49881284) |
|
204-421, gnl|echTel1|scaffold_71366 (7018-6653) |
|
204-421, gnl|hg17|chr14 (73059345-73059713) |
|
204-421, gnl|Hg17|chr14 (73059680-73059460) |
|
204-421, gnl|loxAfr1|scaffold_145731 (137-497) |
|
204-421, gnl|mm7|chr12 (81976254-81976598) |
|
204-421, gnl|Mm7|chr12 (81976585-81976372) |
|
204-421, gnl|monDom2|scaffold_8 (61568460-61568077) |
|
204-421, gnl|oryCun1|scaffold_141557 (5620-5280) |
|
204-421, gnl|panTro1|chr15 (72843908-72844276) |
|
204-421, gnl|rheMac2|chr7 (136657269-136657637) |
|
204-421, gnl|rn3|chr6 (108013552-108013896) |
