Non-Coding RNA Search

Pig2-70D18

Sequence:


               
               GGGGAGGTGACCAACTTCCCGTGGGACCTGCAGGGCTTGTGGGGATCTGAGTGCAGCGTG
GGTCACTCTGGCCCTGGACCCCGAGAGCAGTACCCCGGCCCCTCCCTGGGGCCCCACTCG
TCCCACCTGCAGAGCTCCGCTGAGAAGCAGTTGGAGAGCGAAGACTATCCTGAGGACCAG
AGGTTCTACCAGCACATCCTGAAGATGGTTAAGATCTCCAAGGGCCTGGGGCAGCTCGAG
AGTGCGCAAGAGATGCCCTGCAAAGACCTTGCCAGCATGGTCTGTTGCCTGGCAGCCGAG
TCTTCCAGGATGTCTAGCGAGGGCGAGCACGATGCCCTGGGAGCCATGGACCCCAGGTTT
CTGCCTTGGGGGCCAGAGCTGCCGGAGTGTCCTCTGGATGTGGACGTTGCCCCAGCTGGG
CAGGCGGCCTCTCAGCACGCCTGTTTCCAGCCAAGCAGCAGCCCCCTCAGGCAGGGGCTG
CTCAAGATGAGTTCCAGCAGAGCCAGTCAAGATGCAGAGCCAGGCAAGATGCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGGTGACCAACTTCCCGTGGGACCTGCAGGGCTTGTGGGGATCTGAGTGCAGCGTG
GGTCACTCTGGCCCTGGACCCCGAGAGCAGTACCCCGGCCCCTCCCTGGGGCCCCACTCG
TCCCACCTGCAGAGCTCCGCTGAGAAGCAGTTGGAGAGCGAAGACTATCCTGAGGACCAG
AGGTTCTACCAGCACATCCTGAAGATGGTTAAGATCTCCAAGGGCCTGGGGCAGCTCGAG
AGTGCGCAAGAGATGCCCTGCAAAGACCTTGCCAGCATGGTCTGTTGCCTGGCAGCCGAG
TCTTCCAGGATGTCTAGCGAGGGCGAGCACGATGCCCTGGGAGCCATGGACCCCAGGTTT
CTGCCTTGGGGGCCAGAGCTGCCGGAGTGTCCTCTGGATGTGGACGTTGCCCCAGCTGGG
CAGGCGGCCTCTCAGCACGCCTGTTTCCAGCCAAGCAGCAGCCCCCTCAGGCAGGGGCTG
CTCAAGATGAGTTCCAGCAGAGCCAGTCAAGATGCAGAGCCAGGCAAGATGCAAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               311-464, - strand, RNAz p=0.987949
               

               
               343-533, - strand, RNAz p=0.997359

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-464, - strand, RNAz p=0.987949
               

               
               343-533, - strand, RNAz p=0.997359

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               418-515, - strand, RNAmicro p=0.999663

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               418-515, - strand, RNAmicro p=0.999663

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-533, gnl|bosTau2|chr15 (13620649-13621178)
               

               
               1-533, gnl|canFam2|chr5 (19274788-19274312)
               

               
               1-533, gnl|dasNov1|scaffold_16566 (10845-11323)
               

               
               1-533, gnl|hg17|chr11 (116731979-116732455)
               

               
               1-533, gnl|Hg17|chr11 (116731986-116732530)
               

               
               1-533, gnl|loxAfr1|scaffold_7234 (4366-3890)
               

               
               1-533, gnl|mm7|chr9 (45764666-45764195)
               

               
               1-533, gnl|Mm7|chr9 (45764657-45764122)
               

               
               1-533, gnl|monDom2|scaffold_2 (121942795-121942319)
               

               
               1-533, gnl|oryCun1|scaffold_201482 (43135-43608)
               

               
               1-533, gnl|panTro1|chr9 (118734703-118735179)
               

               
               1-533, gnl|rheMac2|chr14 (115759256-115759732)
               

               
               1-533, gnl|rn3|chr8 (48786012-48785540)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-533, gnl|bosTau2|chr15 (13620649-13621178)
               

               
               1-533, gnl|canFam2|chr5 (19274788-19274312)
               

               
               1-533, gnl|dasNov1|scaffold_16566 (10845-11323)
               

               
               1-533, gnl|hg17|chr11 (116731979-116732455)
               

               
               1-533, gnl|Hg17|chr11 (116731986-116732530)
               

               
               1-533, gnl|loxAfr1|scaffold_7234 (4366-3890)
               

               
               1-533, gnl|mm7|chr9 (45764666-45764195)
               

               
               1-533, gnl|Mm7|chr9 (45764657-45764122)
               

               
               1-533, gnl|monDom2|scaffold_2 (121942795-121942319)
               

               
               1-533, gnl|oryCun1|scaffold_201482 (43135-43608)
               

               
               1-533, gnl|panTro1|chr9 (118734703-118735179)
               

               
               1-533, gnl|rheMac2|chr14 (115759256-115759732)
               

               
               1-533, gnl|rn3|chr8 (48786012-48785540)

	311-464, - strand, RNAz p=0.987949
	343-533, - strand, RNAz p=0.997359

	1-533, gnl\|bosTau2\|chr15 (13620649-13621178)
	1-533, gnl\|canFam2\|chr5 (19274788-19274312)
	1-533, gnl\|dasNov1\|scaffold_16566 (10845-11323)
	1-533, gnl\|hg17\|chr11 (116731979-116732455)
	1-533, gnl\|Hg17\|chr11 (116731986-116732530)
	1-533, gnl\|loxAfr1\|scaffold_7234 (4366-3890)
	1-533, gnl\|mm7\|chr9 (45764666-45764195)
	1-533, gnl\|Mm7\|chr9 (45764657-45764122)
	1-533, gnl\|monDom2\|scaffold_2 (121942795-121942319)
	1-533, gnl\|oryCun1\|scaffold_201482 (43135-43608)
	1-533, gnl\|panTro1\|chr9 (118734703-118735179)
	1-533, gnl\|rheMac2\|chr14 (115759256-115759732)
	1-533, gnl\|rn3\|chr8 (48786012-48785540)