Non-Coding RNA Search

Pig2-71N09

Sequence:


               
               GTAGAAATACACTTTTATTCTGTTGTCAAGTACTCATAAAATGCAGCTAAACTGCATGTT
TGGCCAAAGGCTAGACTAATATTAACAGAATGAATGGAAGGTGGTAATACATGGGATTTG
TGAGATGATTCTGGATAATATTTTCTAGCAAAAAAAACACAATAACCTATATTATCTCAA
TTTGCTGGATCAGGTCAACTTATACAATAATTTTCTATCCTCAGATTTTCAAAACTTGGA
TCACTACAGTAGGACTAAATAGGTACTCTATATGCCCAAATCAACTTCTTTGAAGATAAG
ACATCAGAAGGCAGTGTTGTTCCTAATGTATCTTAATTACTGATAGAAGGCCAAAGCTTC
ACTGTCTAAACAGGACTTCTCAAAGCCTGACAGAAAAGCCTTTGGGAACAAGGAGTGGTA
AAAAAATTTGCTAGCCTAGCTAAGCCAATTCATGTTCCCTGGGAAAAAGGTCTTTGTACA
TCTCCTCAGTTCTTTCTCAGAAATGTTGACCTTTTGCTCCCCGAGAACTAGAACCTAGAA
TAAGGGCTTAACAGATTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGAAATACACTTTTATTCTGTTGTCAAGTACTCATAAAATGCAGCTAAACTGCATGTT
TGGCCAAAGGCTAGACTAATATTAACAGAATGAATGGAAGGTGGTAATACATGGGATTTG
TGAGATGATTCTGGATAATATTTTCTAGCAAAAAAAACACAATAACCTATATTATCTCAA
TTTGCTGGATCAGGTCAACTTATACAATAATTTTCTATCCTCAGATTTTCAAAACTTGGA
TCACTACAGTAGGACTAAATAGGTACTCTATATGCCCAAATCAACTTCTTTGAAGATAAG
ACATCAGAAGGCAGTGTTGTTCCTAATGTATCTTAATTACTGATAGAAGGCCAAAGCTTC
ACTGTCTAAACAGGACTTCTCAAAGCCTGACAGAAAAGCCTTTGGGAACAAGGAGTGGTA
AAAAAATTTGCTAGCCTAGCTAAGCCAATTCATGTTCCCTGGGAAAAAGGTCTTTGTACA
TCTCCTCAGTTCTTTCTCAGAAATGTTGACCTTTTGCTCCCCGAGAACTAGAACCTAGAA
TAAGGGCTTAACAGATTGCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-167, + strand, RNAz p=0.78588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-167, + strand, RNAz p=0.78588

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-475, gnl|bosTau2|chr24 (44092788-44093251)
               

               
               13-475, gnl|Hg17|chr18 (55251053-55250603)
               

               
               13-475, gnl|Mm7|chr18 (66454184-66453729)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-475, gnl|bosTau2|chr24 (44092788-44093251)
               

               
               13-475, gnl|Hg17|chr18 (55251053-55250603)
               

               
               13-475, gnl|Mm7|chr18 (66454184-66453729)

	13-475, gnl\|bosTau2\|chr24 (44092788-44093251)
	13-475, gnl\|Hg17\|chr18 (55251053-55250603)
	13-475, gnl\|Mm7\|chr18 (66454184-66453729)