Non-Coding RNA Search

Pig2-72B23

Sequence:


               
               GTTTTATAAGACATACTGCAAAGAAAACTAGGAATGTTGAAATAGAGAAGATGAGGGGAT
TCCTCTGATAAGATGATTAGGAAAGGACTCAAGGTGAGGGGATCTAAGCTGGGACCTGAA
TGTCAGGAGGAGTCAGAGTCGGACAGAGAGGAGCCACAGATCCAAAGCCTGAGGCAGGAG
AGATGTGGTCACGCTCAAGGAACTAGAGGCAAAAGACCACTGTGGTTAGGAATGAGGAGT
GATCTCTTCGTTCCTGAAATGTTTTCCTCATTTGAAGTTATTTCCTTAGGAAAAATACCC
AGAAGTGAAATTTTAGGGTCAAAGATAGCAGCATGTTAAGGACTTTGAGTATGTACTGAA
TTTGGTTGTGATTTTACACAAAATCTATAATGTAGTCTAAAACTAAGGAAATGTAAAGTA
ATTTAGAACTATAGGCAGTATAGTATGTAATATACCAGAGTTGTGTCTGCTGCGGTCCAA
GTGTGCTAAAGATGAGTGGGTACCGAGGAGGATTATGGAAACAGTCATCTGGGTTTCTGG
GTTCAGGAATAATGGCCTCTCTTCTCCACTAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTATAAGACATACTGCAAAGAAAACTAGGAATGTTGAAATAGAGAAGATGAGGGGAT
TCCTCTGATAAGATGATTAGGAAAGGACTCAAGGTGAGGGGATCTAAGCTGGGACCTGAA
TGTCAGGAGGAGTCAGAGTCGGACAGAGAGGAGCCACAGATCCAAAGCCTGAGGCAGGAG
AGATGTGGTCACGCTCAAGGAACTAGAGGCAAAAGACCACTGTGGTTAGGAATGAGGAGT
GATCTCTTCGTTCCTGAAATGTTTTCCTCATTTGAAGTTATTTCCTTAGGAAAAATACCC
AGAAGTGAAATTTTAGGGTCAAAGATAGCAGCATGTTAAGGACTTTGAGTATGTACTGAA
TTTGGTTGTGATTTTACACAAAATCTATAATGTAGTCTAAAACTAAGGAAATGTAAAGTA
ATTTAGAACTATAGGCAGTATAGTATGTAATATACCAGAGTTGTGTCTGCTGCGGTCCAA
GTGTGCTAAAGATGAGTGGGTACCGAGGAGGATTATGGAAACAGTCATCTGGGTTTCTGG
GTTCAGGAATAATGGCCTCTCTTCTCCACTAGGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               197-311, + strand, RNAz p=0.72423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-311, + strand, RNAz p=0.72423

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-111, gnl|bosTau2|chr13 (42382990-42382881)
               

               
               2-111, gnl|canFam2|chr24 (24517044-24517294)
               

               
               2-111, gnl|dasNov1|scaffold_69820 (2119-1864)
               

               
               2-111, gnl|echTel1|scaffold_165387 (1752-2005)
               

               
               2-111, gnl|hg17|chr20 (30186936-30187184)
               

               
               2-111, gnl|loxAfr1|scaffold_36626 (9887-9633)
               

               
               2-111, gnl|mm7|chr2 (152922678-152922930)
               

               
               2-111, gnl|panTro1|chr21 (31884964-31885212)
               

               
               2-111, gnl|rheMac2|chr10 (32436952-32436702)
               

               
               2-111, gnl|rn3|chr3 (143436578-143436784)
               


               
               119-476, gnl|bosTau2|chr13 (42382671-42382315)
               

               
               119-476, gnl|Hg17|chr20 (30187095-30187440)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-111, gnl|bosTau2|chr13 (42382990-42382881)
               

               
               2-111, gnl|canFam2|chr24 (24517044-24517294)
               

               
               2-111, gnl|dasNov1|scaffold_69820 (2119-1864)
               

               
               2-111, gnl|echTel1|scaffold_165387 (1752-2005)
               

               
               2-111, gnl|hg17|chr20 (30186936-30187184)
               

               
               2-111, gnl|loxAfr1|scaffold_36626 (9887-9633)
               

               
               2-111, gnl|mm7|chr2 (152922678-152922930)
               

               
               2-111, gnl|panTro1|chr21 (31884964-31885212)
               

               
               2-111, gnl|rheMac2|chr10 (32436952-32436702)
               

               
               2-111, gnl|rn3|chr3 (143436578-143436784)
               


               
               119-476, gnl|bosTau2|chr13 (42382671-42382315)
               

               
               119-476, gnl|Hg17|chr20 (30187095-30187440)

	2-111, gnl\|bosTau2\|chr13 (42382990-42382881)
	2-111, gnl\|canFam2\|chr24 (24517044-24517294)
	2-111, gnl\|dasNov1\|scaffold_69820 (2119-1864)
	2-111, gnl\|echTel1\|scaffold_165387 (1752-2005)
	2-111, gnl\|hg17\|chr20 (30186936-30187184)
	2-111, gnl\|loxAfr1\|scaffold_36626 (9887-9633)
	2-111, gnl\|mm7\|chr2 (152922678-152922930)
	2-111, gnl\|panTro1\|chr21 (31884964-31885212)
	2-111, gnl\|rheMac2\|chr10 (32436952-32436702)
	2-111, gnl\|rn3\|chr3 (143436578-143436784)

	119-476, gnl\|bosTau2\|chr13 (42382671-42382315)
	119-476, gnl\|Hg17\|chr20 (30187095-30187440)