Non-Coding RNA Search

Pig2-72O17

Sequence:


               
               GACGCGCCAGCCAACGCCGTCAGTGTGTGCCGTGACGCGGCCCAGGTGGTCGTGGCTGGC
CGCAGCATCTTCAAGATCTACGCCATCGAGGAGGAGCAGTTTGTGGAGAAGCTGAATCTG
CGTGTGGGCCGCAAGCCCTCGCTCAACCTGAGTTGCGCAGATGTCGTCTGGCACCAGATG
GATGAGAACCTGCTGGCTACGGCGGCCACCAACGGTGTGGTGGTCACCTGGAACCTGGGC
CGGCCGTCCCGCAACAAGCAGGACCAGCTGTTTACGGAGCACAAGCGCACGGTAAACAAA
GTCTGCTTCCACCCCACTGAGGCCCATGTGCTGCTCAGTGGCTCCCAGGATGGCTTCATG
AAGTGTTTCGACCTTCGCAGAAAGGACTCTGTCAGCACCTTCTCGGGCCAGTCCGAGAGT
GTGCGCGACGTCCAGTTCAGCATCCGGGACTACTTCACCTTCGCCTCCACGTTCGAGAAC
GGCAACGTGCAGCTCTGGGACATCCGGCGGCCCGACCGCTGCGAGAGGATGTTCACGGCG
CACAACGGGCCTGTCTTCTGCTGCGACTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGCGCCAGCCAACGCCGTCAGTGTGTGCCGTGACGCGGCCCAGGTGGTCGTGGCTGGC
CGCAGCATCTTCAAGATCTACGCCATCGAGGAGGAGCAGTTTGTGGAGAAGCTGAATCTG
CGTGTGGGCCGCAAGCCCTCGCTCAACCTGAGTTGCGCAGATGTCGTCTGGCACCAGATG
GATGAGAACCTGCTGGCTACGGCGGCCACCAACGGTGTGGTGGTCACCTGGAACCTGGGC
CGGCCGTCCCGCAACAAGCAGGACCAGCTGTTTACGGAGCACAAGCGCACGGTAAACAAA
GTCTGCTTCCACCCCACTGAGGCCCATGTGCTGCTCAGTGGCTCCCAGGATGGCTTCATG
AAGTGTTTCGACCTTCGCAGAAAGGACTCTGTCAGCACCTTCTCGGGCCAGTCCGAGAGT
GTGCGCGACGTCCAGTTCAGCATCCGGGACTACTTCACCTTCGCCTCCACGTTCGAGAAC
GGCAACGTGCAGCTCTGGGACATCCGGCGGCCCGACCGCTGCGAGAGGATGTTCACGGCG
CACAACGGGCCTGTCTTCTGCTGCGACTGGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               240-359, - strand, RNAz p=0.659043

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, - strand, RNAz p=0.659043

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-414, gnl|bosTau2|chr25 (1209149-1209562)
               

               
               1-414, gnl|danRer3|chr24 (30794360-30793992)
               

               
               1-414, gnl|echTel1|scaffold_323419 (7254-7629)
               

               
               1-414, gnl|fr1|chrUn (101945928-101946299)
               

               
               1-414, gnl|galGal2|chr14 (1942322-1941944)
               

               
               1-414, gnl|hg17|chr16 (679151-679529)
               

               
               1-414, gnl|Hg17|chr16 (679566-679153)
               

               
               1-414, gnl|mm7|chr17 (24007939-24007560)
               

               
               1-414, gnl|Mm7|chr17 (24007521-24007934)
               

               
               1-414, gnl|monDom2|scaffold_49 (9782684-9783059)
               

               
               1-414, gnl|panTro1|chr18 (719557-719935)
               

               
               1-414, gnl|rheMac2|chr20 (681348-681726)
               

               
               1-414, gnl|rn3|chr10 (15090188-15089809)
               

               
               1-414, gnl|tetNig1|chr2 (4730886-4731262)
               

               
               1-414, gnl|xenTro1|scaffold_591 (680689-681060)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-414, gnl|bosTau2|chr25 (1209149-1209562)
               

               
               1-414, gnl|danRer3|chr24 (30794360-30793992)
               

               
               1-414, gnl|echTel1|scaffold_323419 (7254-7629)
               

               
               1-414, gnl|fr1|chrUn (101945928-101946299)
               

               
               1-414, gnl|galGal2|chr14 (1942322-1941944)
               

               
               1-414, gnl|hg17|chr16 (679151-679529)
               

               
               1-414, gnl|Hg17|chr16 (679566-679153)
               

               
               1-414, gnl|mm7|chr17 (24007939-24007560)
               

               
               1-414, gnl|Mm7|chr17 (24007521-24007934)
               

               
               1-414, gnl|monDom2|scaffold_49 (9782684-9783059)
               

               
               1-414, gnl|panTro1|chr18 (719557-719935)
               

               
               1-414, gnl|rheMac2|chr20 (681348-681726)
               

               
               1-414, gnl|rn3|chr10 (15090188-15089809)
               

               
               1-414, gnl|tetNig1|chr2 (4730886-4731262)
               

               
               1-414, gnl|xenTro1|scaffold_591 (680689-681060)

	1-414, gnl\|bosTau2\|chr25 (1209149-1209562)
	1-414, gnl\|danRer3\|chr24 (30794360-30793992)
	1-414, gnl\|echTel1\|scaffold_323419 (7254-7629)
	1-414, gnl\|fr1\|chrUn (101945928-101946299)
	1-414, gnl\|galGal2\|chr14 (1942322-1941944)
	1-414, gnl\|hg17\|chr16 (679151-679529)
	1-414, gnl\|Hg17\|chr16 (679566-679153)
	1-414, gnl\|mm7\|chr17 (24007939-24007560)
	1-414, gnl\|Mm7\|chr17 (24007521-24007934)
	1-414, gnl\|monDom2\|scaffold_49 (9782684-9783059)
	1-414, gnl\|panTro1\|chr18 (719557-719935)
	1-414, gnl\|rheMac2\|chr20 (681348-681726)
	1-414, gnl\|rn3\|chr10 (15090188-15089809)
	1-414, gnl\|tetNig1\|chr2 (4730886-4731262)
	1-414, gnl\|xenTro1\|scaffold_591 (680689-681060)