Non-Coding RNA Search

Pig2-76E24

Sequence:


               
               TTGAAGCTGGGTCAGCCAACTTAGGACTTATTACTGTTGATATTGCATTAGCTGCTGATC
ATCATTCTAAACATGAAGCACAAAGACATTTCTTAGTGACTCATGATACCAGAACTAAAA
GGTTGTGGTTTTTGTGGCCAGATGATACCCTGAAGAATAAGAGGTGTCGGAACAAGTGTG
GTTGTCTTGGTGGCTGTAGATTCTTTGGTGGCACAGTAACTGGCCTAGATTTCTTCAAAC
TTGAAGAATTGACACCTTCCAGTAGCTCTGCATTTTCAAGTACAAGTGCGGAGTCTGATA
TGTATTACGGACAGTCTCTGCTACAGCCTGGAGAATGGATTATTACTAAAGAAGTTCCCA
AAATTGTGGATGGAAATGTGAATGGCTTGAAGAGGAAAGAATGGGANAACAAATCAGTAG
GAATAGAAGTAGAGAGAAAAACTCAGCACCTTAGTCTTCAAGTACCATTACGATCTCATA
GCTCATCCTCTTCCTCAGAAGAGACAAGTAGTTCTAGTGCTGCACAGCCTTTATTGGCTG
GTGAAAAGGAGAGTCCCTCTTCAGTTGCTGATGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAAGCTGGGTCAGCCAACTTAGGACTTATTACTGTTGATATTGCATTAGCTGCTGATC
ATCATTCTAAACATGAAGCACAAAGACATTTCTTAGTGACTCATGATACCAGAACTAAAA
GGTTGTGGTTTTTGTGGCCAGATGATACCCTGAAGAATAAGAGGTGTCGGAACAAGTGTG
GTTGTCTTGGTGGCTGTAGATTCTTTGGTGGCACAGTAACTGGCCTAGATTTCTTCAAAC
TTGAAGAATTGACACCTTCCAGTAGCTCTGCATTTTCAAGTACAAGTGCGGAGTCTGATA
TGTATTACGGACAGTCTCTGCTACAGCCTGGAGAATGGATTATTACTAAAGAAGTTCCCA
AAATTGTGGATGGAAATGTGAATGGCTTGAAGAGGAAAGAATGGGANAACAAATCAGTAG
GAATAGAAGTAGAGAGAAAAACTCAGCACCTTAGTCTTCAAGTACCATTACGATCTCATA
GCTCATCCTCTTCCTCAGAAGAGACAAGTAGTTCTAGTGCTGCACAGCCTTTATTGGCTG
GTGAAAAGGAGAGTCCCTCTTCAGTTGCTGATGACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-318, + strand, RNAz p=0.951468

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-318, + strand, RNAz p=0.951468

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               120-380, gnl|bosTau2|chr17 (20629621-20629361)
               

               
               120-380, gnl|Hg17|chr4 (123513531-123513796)
               

               
               120-380, gnl|Mm7|chr3 (36753898-36754164)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-380, gnl|bosTau2|chr17 (20629621-20629361)
               

               
               120-380, gnl|Hg17|chr4 (123513531-123513796)
               

               
               120-380, gnl|Mm7|chr3 (36753898-36754164)

	120-380, gnl\|bosTau2\|chr17 (20629621-20629361)
	120-380, gnl\|Hg17\|chr4 (123513531-123513796)
	120-380, gnl\|Mm7\|chr3 (36753898-36754164)