Non-Coding RNA Search

Pig2-7A20

Sequence:


               
               GCTAATACCTGCCAAAGTTTTAGCCTACCCTGTCTGGTGGCTACAAGTTTTCAGGGGCCA
TGTCCTCTAGACTTGGAGGAATGGAATATGTCAGGGACCACCCAGTGGATGCCTAAGAAG
AGAAAGGCAGGAAGGAGGTAGGCGAAGTATTTGAACCCAGTGTGGGGGCATTTATTAGAA
TCTTTGATCTACCCAGGCTCTATTCCTGCCCCCCACATAGCCTCCTCACTTCCCACCTAG
TCTCCTCTTGCTCTGTCCAATCTACCCAGAGTTGCCCTCGAGCACACCTTGAAGGCAGGG
ACCATAGGACCCGGGTCCCACCTCACCGTCAGCACCCCTGCCATGCTGCCACCCCTTAAT
ATATCTGCTTGTCCCATTTAGCTCACTCTCTCAGTCAGCTGTGATCTGAGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAATACCTGCCAAAGTTTTAGCCTACCCTGTCTGGTGGCTACAAGTTTTCAGGGGCCA
TGTCCTCTAGACTTGGAGGAATGGAATATGTCAGGGACCACCCAGTGGATGCCTAAGAAG
AGAAAGGCAGGAAGGAGGTAGGCGAAGTATTTGAACCCAGTGTGGGGGCATTTATTAGAA
TCTTTGATCTACCCAGGCTCTATTCCTGCCCCCCACATAGCCTCCTCACTTCCCACCTAG
TCTCCTCTTGCTCTGTCCAATCTACCCAGAGTTGCCCTCGAGCACACCTTGAAGGCAGGG
ACCATAGGACCCGGGTCCCACCTCACCGTCAGCACCCCTGCCATGCTGCCACCCCTTAAT
ATATCTGCTTGTCCCATTTAGCTCACTCTCTCAGTCAGCTGTGATCTGAGGGGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               209-324, + strand, RNAz p=0.992322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-324, + strand, RNAz p=0.992322

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               162-295, - strand, RNAmicro p=0.983593

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               162-295, - strand, RNAmicro p=0.983593

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_173193, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_173193, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-414, gnl|bosTau2|chr26 (16684209-16683789)
               

               
               2-414, gnl|canFam2|chr28 (17405392-17405801)
               

               
               2-414, gnl|dasNov1|scaffold_1670 (51320-51750)
               

               
               2-414, gnl|echTel1|scaffold_315161 (48209-48669)
               

               
               2-414, gnl|hg17|chr10 (103575718-103576181)
               

               
               2-414, gnl|Hg17|chr10 (103576288-103575843)
               

               
               2-414, gnl|loxAfr1|scaffold_58414 (1910-1455)
               

               
               2-414, gnl|mm7|chr19 (45689251-45689661)
               

               
               2-414, gnl|Mm7|chr19 (45689765-45689372)
               

               
               2-414, gnl|monDom2|scaffold_14 (61641863-61641314)
               

               
               2-414, gnl|oryCun1|scaffold_194907 (28514-28950)
               

               
               2-414, gnl|panTro1|chr8 (105331383-105331843)
               

               
               2-414, gnl|rheMac2|chr9 (101462468-101462929)
               

               
               2-414, gnl|rn3|chr1 (251269244-251269657)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-414, gnl|bosTau2|chr26 (16684209-16683789)
               

               
               2-414, gnl|canFam2|chr28 (17405392-17405801)
               

               
               2-414, gnl|dasNov1|scaffold_1670 (51320-51750)
               

               
               2-414, gnl|echTel1|scaffold_315161 (48209-48669)
               

               
               2-414, gnl|hg17|chr10 (103575718-103576181)
               

               
               2-414, gnl|Hg17|chr10 (103576288-103575843)
               

               
               2-414, gnl|loxAfr1|scaffold_58414 (1910-1455)
               

               
               2-414, gnl|mm7|chr19 (45689251-45689661)
               

               
               2-414, gnl|Mm7|chr19 (45689765-45689372)
               

               
               2-414, gnl|monDom2|scaffold_14 (61641863-61641314)
               

               
               2-414, gnl|oryCun1|scaffold_194907 (28514-28950)
               

               
               2-414, gnl|panTro1|chr8 (105331383-105331843)
               

               
               2-414, gnl|rheMac2|chr9 (101462468-101462929)
               

               
               2-414, gnl|rn3|chr1 (251269244-251269657)

	2-414, gnl\|bosTau2\|chr26 (16684209-16683789)
	2-414, gnl\|canFam2\|chr28 (17405392-17405801)
	2-414, gnl\|dasNov1\|scaffold_1670 (51320-51750)
	2-414, gnl\|echTel1\|scaffold_315161 (48209-48669)
	2-414, gnl\|hg17\|chr10 (103575718-103576181)
	2-414, gnl\|Hg17\|chr10 (103576288-103575843)
	2-414, gnl\|loxAfr1\|scaffold_58414 (1910-1455)
	2-414, gnl\|mm7\|chr19 (45689251-45689661)
	2-414, gnl\|Mm7\|chr19 (45689765-45689372)
	2-414, gnl\|monDom2\|scaffold_14 (61641863-61641314)
	2-414, gnl\|oryCun1\|scaffold_194907 (28514-28950)
	2-414, gnl\|panTro1\|chr8 (105331383-105331843)
	2-414, gnl\|rheMac2\|chr9 (101462468-101462929)
	2-414, gnl\|rn3\|chr1 (251269244-251269657)