Non-Coding RNA Search

Pig2-80C11

Sequence:


               
               GCTCTTCCCTGGGTCCACATCTGTTAGATGCTGGGTTTGGGAGTTCTTTGCAGGATTCGT
AAAGAAACTCCTGCTGCTCTTCCACATACTTTTTCCCAGAAAGGAGAACTTGTTCCACTG
GCAGAAAAGACCTCCGCTGGTGAAGGAAGGCCCATCACCCACATTTATACACATCCAGTG
TTCCTCTGATCCGTGGTGTCTGTTCATGAATGGTTGCCTGGAGGACCTCCAAAGGAGCCA
AGGTGGCCTGAAGATCATGAACGTGTCTTCCGAGCACTGCAACACCTCGCATTGGCTGAA
ACTGGAAGCAACAGTGAAGGCCTCTGTATACGTGGTGGCTTTCTCCTTTGCCACCTTCAC
CACGGGCATCATTGTCTTCATAGTGCCACAGAACTCCAAGATGAGAAGCGAGGTCCGATA
CATCCTGCTTTGCCACCATCTGCTGTGCATCTCCTCCTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTTCCCTGGGTCCACATCTGTTAGATGCTGGGTTTGGGAGTTCTTTGCAGGATTCGT
AAAGAAACTCCTGCTGCTCTTCCACATACTTTTTCCCAGAAAGGAGAACTTGTTCCACTG
GCAGAAAAGACCTCCGCTGGTGAAGGAAGGCCCATCACCCACATTTATACACATCCAGTG
TTCCTCTGATCCGTGGTGTCTGTTCATGAATGGTTGCCTGGAGGACCTCCAAAGGAGCCA
AGGTGGCCTGAAGATCATGAACGTGTCTTCCGAGCACTGCAACACCTCGCATTGGCTGAA
ACTGGAAGCAACAGTGAAGGCCTCTGTATACGTGGTGGCTTTCTCCTTTGCCACCTTCAC
CACGGGCATCATTGTCTTCATAGTGCCACAGAACTCCAAGATGAGAAGCGAGGTCCGATA
CATCCTGCTTTGCCACCATCTGCTGTGCATCTCCTCCTACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               11-113, - strand, RNAz p=0.83632

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-113, - strand, RNAz p=0.83632

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               9-150, gnl|bosTau2|chr2 (70903968-70903826)
               

               
               9-150, gnl|canFam2|chr25 (45379107-45379545)
               

               
               9-150, gnl|dasNov1|scaffold_11336 (58462-58003)
               

               
               9-150, gnl|echTel1|scaffold_225149 (9556-9985)
               

               
               9-150, gnl|hg17|chr2 (230815371-230815826)
               

               
               9-150, gnl|Hg17|chr2 (230815630-230815771)
               

               
               9-150, gnl|mm7|chr8_random (4337276-4337640)
               

               
               9-150, gnl|Mm7|chr8_random (4051693-4051826)
               

               
               9-150, gnl|oryCun1|scaffold_129778 (10581-11010)
               

               
               9-150, gnl|panTro1|chr13 (121459632-121460087)
               

               
               9-150, gnl|rheMac2|chr12 (93993931-93994384)
               

               
               9-150, gnl|rn3|chr9 (84407274-84407645)
               


               
               233-461, gnl|bosTau2|chr2 (70890040-70889812)
               

               
               233-461, gnl|Mm7|chr8_random (4342050-4342279)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-150, gnl|bosTau2|chr2 (70903968-70903826)
               

               
               9-150, gnl|canFam2|chr25 (45379107-45379545)
               

               
               9-150, gnl|dasNov1|scaffold_11336 (58462-58003)
               

               
               9-150, gnl|echTel1|scaffold_225149 (9556-9985)
               

               
               9-150, gnl|hg17|chr2 (230815371-230815826)
               

               
               9-150, gnl|Hg17|chr2 (230815630-230815771)
               

               
               9-150, gnl|mm7|chr8_random (4337276-4337640)
               

               
               9-150, gnl|Mm7|chr8_random (4051693-4051826)
               

               
               9-150, gnl|oryCun1|scaffold_129778 (10581-11010)
               

               
               9-150, gnl|panTro1|chr13 (121459632-121460087)
               

               
               9-150, gnl|rheMac2|chr12 (93993931-93994384)
               

               
               9-150, gnl|rn3|chr9 (84407274-84407645)
               


               
               233-461, gnl|bosTau2|chr2 (70890040-70889812)
               

               
               233-461, gnl|Mm7|chr8_random (4342050-4342279)

	9-150, gnl\|bosTau2\|chr2 (70903968-70903826)
	9-150, gnl\|canFam2\|chr25 (45379107-45379545)
	9-150, gnl\|dasNov1\|scaffold_11336 (58462-58003)
	9-150, gnl\|echTel1\|scaffold_225149 (9556-9985)
	9-150, gnl\|hg17\|chr2 (230815371-230815826)
	9-150, gnl\|Hg17\|chr2 (230815630-230815771)
	9-150, gnl\|mm7\|chr8_random (4337276-4337640)
	9-150, gnl\|Mm7\|chr8_random (4051693-4051826)
	9-150, gnl\|oryCun1\|scaffold_129778 (10581-11010)
	9-150, gnl\|panTro1\|chr13 (121459632-121460087)
	9-150, gnl\|rheMac2\|chr12 (93993931-93994384)
	9-150, gnl\|rn3\|chr9 (84407274-84407645)

	233-461, gnl\|bosTau2\|chr2 (70890040-70889812)
	233-461, gnl\|Mm7\|chr8_random (4342050-4342279)