Non-Coding RNA Search

Pig2-80D11

Sequence:


               
               GCCAAGCGGATGGCCTGGGGTAAGGCCATCTGCTTGTCCATCTGGATGGTTTGCCTGCTA
GTACTCCTTGCCACAGATCATCTATGGCAACGTCCTTTACCACAACAGGCTCGTCTGTGG
CTATCACAATAACGCAACCCTCCCCATGGTTCTGGCCACCCAGATGACACTGGGGTTCTT
CCTGCCACTGCTTGCCATGATTGTCTGCTACTCAGTCATCATCAAGACACTGCTTCAGGC
CCGTGGCTTCCAGAAGCACAAGTCTCTGAAGATCATCTTCCTGGTCGTGGCAGTGATCCT
GCTGACCCAGACGCCCTTCAACCTTGTGAAGCTCATGCGCAGCACAAACTGGGAGTACCA
CAGCATGACCAGCTTCTACTATGCCATCACGGGGACAGAAGCCATTGCCTACCTGCGCGC
CTGCCTTAACCCTGTGCTCTATGCCTTCGTTGGCCTGAAGTTTCAGAAGAACTTCTGGAA
ACTTGTGAAAGACATTGGCTGCCTCTCTTACCTGGATGTCTCAAGACAACAGAAGTCTTC
TGAGGACATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAGCGGATGGCCTGGGGTAAGGCCATCTGCTTGTCCATCTGGATGGTTTGCCTGCTA
GTACTCCTTGCCACAGATCATCTATGGCAACGTCCTTTACCACAACAGGCTCGTCTGTGG
CTATCACAATAACGCAACCCTCCCCATGGTTCTGGCCACCCAGATGACACTGGGGTTCTT
CCTGCCACTGCTTGCCATGATTGTCTGCTACTCAGTCATCATCAAGACACTGCTTCAGGC
CCGTGGCTTCCAGAAGCACAAGTCTCTGAAGATCATCTTCCTGGTCGTGGCAGTGATCCT
GCTGACCCAGACGCCCTTCAACCTTGTGAAGCTCATGCGCAGCACAAACTGGGAGTACCA
CAGCATGACCAGCTTCTACTATGCCATCACGGGGACAGAAGCCATTGCCTACCTGCGCGC
CTGCCTTAACCCTGTGCTCTATGCCTTCGTTGGCCTGAAGTTTCAGAAGAACTTCTGGAA
ACTTGTGAAAGACATTGGCTGCCTCTCTTACCTGGATGTCTCAAGACAACAGAAGTCTTC
TGAGGACATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WNM7_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WNM7_PONPY

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-159, + strand, RNAz p=0.999894
               

               
               1-159, - strand, RNAz p=0.999894
               

               
               1-116, + strand, RNAz p=0.975046
               

               
               1-116, - strand, RNAz p=0.975046

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, + strand, RNAz p=0.999894
               

               
               1-159, - strand, RNAz p=0.999894
               

               
               1-116, + strand, RNAz p=0.975046
               

               
               1-116, - strand, RNAz p=0.975046

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-548, gnl|bosTau2|chr22 (42080035-42079492)
               

               
               1-548, gnl|canFam2|chr20 (45565091-45564261)
               

               
               1-548, gnl|danRer3|chr2 (25999856-25999030)
               

               
               1-548, gnl|dasNov1|scaffold_98183 (2141-1311)
               

               
               1-548, gnl|echTel1|scaffold_278506 (38827-37997)
               

               
               1-548, gnl|fr1|chrUn (3630227-3631079)
               

               
               1-548, gnl|galGal2|chr27_random (671714-672571)
               

               
               1-548, gnl|hg17|chr3 (45963074-45963904)
               

               
               1-548, gnl|Hg17|chr3 (45963401-45963947)
               

               
               1-548, gnl|loxAfr1|scaffold_1332 (102293-101461)
               

               
               1-548, gnl|mm7|chr9 (123528860-123529690)
               

               
               1-548, gnl|Mm7|chr9 (123529187-123529733)
               

               
               1-548, gnl|monDom2|scaffold_7 (66694864-66695694)
               

               
               1-548, gnl|oryCun1|scaffold_213729 (64325-65155)
               

               
               1-548, gnl|panTro1|chr2 (47312325-47313155)
               

               
               1-548, gnl|rheMac2|chr2 (90582434-90581604)
               

               
               1-548, gnl|rn3|chr8 (128589424-128590254)
               

               
               1-548, gnl|tetNig1|chr6 (5056690-5057512)
               

               
               1-548, gnl|xenTro1|scaffold_26 (1377116-1377932)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-548, gnl|bosTau2|chr22 (42080035-42079492)
               

               
               1-548, gnl|canFam2|chr20 (45565091-45564261)
               

               
               1-548, gnl|danRer3|chr2 (25999856-25999030)
               

               
               1-548, gnl|dasNov1|scaffold_98183 (2141-1311)
               

               
               1-548, gnl|echTel1|scaffold_278506 (38827-37997)
               

               
               1-548, gnl|fr1|chrUn (3630227-3631079)
               

               
               1-548, gnl|galGal2|chr27_random (671714-672571)
               

               
               1-548, gnl|hg17|chr3 (45963074-45963904)
               

               
               1-548, gnl|Hg17|chr3 (45963401-45963947)
               

               
               1-548, gnl|loxAfr1|scaffold_1332 (102293-101461)
               

               
               1-548, gnl|mm7|chr9 (123528860-123529690)
               

               
               1-548, gnl|Mm7|chr9 (123529187-123529733)
               

               
               1-548, gnl|monDom2|scaffold_7 (66694864-66695694)
               

               
               1-548, gnl|oryCun1|scaffold_213729 (64325-65155)
               

               
               1-548, gnl|panTro1|chr2 (47312325-47313155)
               

               
               1-548, gnl|rheMac2|chr2 (90582434-90581604)
               

               
               1-548, gnl|rn3|chr8 (128589424-128590254)
               

               
               1-548, gnl|tetNig1|chr6 (5056690-5057512)
               

               
               1-548, gnl|xenTro1|scaffold_26 (1377116-1377932)

	1-159, + strand, RNAz p=0.999894
	1-159, - strand, RNAz p=0.999894
	1-116, + strand, RNAz p=0.975046
	1-116, - strand, RNAz p=0.975046

	1-548, gnl\|bosTau2\|chr22 (42080035-42079492)
	1-548, gnl\|canFam2\|chr20 (45565091-45564261)
	1-548, gnl\|danRer3\|chr2 (25999856-25999030)
	1-548, gnl\|dasNov1\|scaffold_98183 (2141-1311)
	1-548, gnl\|echTel1\|scaffold_278506 (38827-37997)
	1-548, gnl\|fr1\|chrUn (3630227-3631079)
	1-548, gnl\|galGal2\|chr27_random (671714-672571)
	1-548, gnl\|hg17\|chr3 (45963074-45963904)
	1-548, gnl\|Hg17\|chr3 (45963401-45963947)
	1-548, gnl\|loxAfr1\|scaffold_1332 (102293-101461)
	1-548, gnl\|mm7\|chr9 (123528860-123529690)
	1-548, gnl\|Mm7\|chr9 (123529187-123529733)
	1-548, gnl\|monDom2\|scaffold_7 (66694864-66695694)
	1-548, gnl\|oryCun1\|scaffold_213729 (64325-65155)
	1-548, gnl\|panTro1\|chr2 (47312325-47313155)
	1-548, gnl\|rheMac2\|chr2 (90582434-90581604)
	1-548, gnl\|rn3\|chr8 (128589424-128590254)
	1-548, gnl\|tetNig1\|chr6 (5056690-5057512)
	1-548, gnl\|xenTro1\|scaffold_26 (1377116-1377932)