Non-Coding RNA Search

Pig2-80E17

Sequence:


               
               TTCAGCTTCTAGGAATTAGGCTCACACAGGGTGGAGAGATCATAGCCCTTCAGGGGGAAT
ATTTCTGAACAAATCACAGATGATTAAATTCTCTAAGAAACAGCTTCCTACCTAAATGAG
AGTGGGAAAGATGGGGGAGAAAGCCTGTCTGTTTCCAGCCATGTGTCCAGAGCCCCAGGG
GTTGAGGAGAGTCCCCAATCCCCCACAGGCCTCTCTTTTCTGTATTAGGCTTTGCTCTGC
AGCCTTGAGTTAATTTCACCCCTGCTGCTTTGTCTTGGGGGAGGGAGTGCTGGTTTAGGC
TGTTGTGAGGAGATGACTGTTCTGCTGCCACACACAATAGTCATGTCATTTTATCGGGAG
TGCTACCCCAGGGCTGAGAACTGCTGCTGCAGAGATAAACCCGTCCCTCTCACCCGCCTA
TTGTGTACACAGTGAAGGTCATAGGTTCAAGTCTTGTCTGAGAGCTTTGGATATGCTCCA
TCTCCCAGGCTCCTCAGTGCCATTTTCTTCCTTTTCCAGACTGGGGCTTGCCATTGGAGG
AG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGCTTCTAGGAATTAGGCTCACACAGGGTGGAGAGATCATAGCCCTTCAGGGGGAAT
ATTTCTGAACAAATCACAGATGATTAAATTCTCTAAGAAACAGCTTCCTACCTAAATGAG
AGTGGGAAAGATGGGGGAGAAAGCCTGTCTGTTTCCAGCCATGTGTCCAGAGCCCCAGGG
GTTGAGGAGAGTCCCCAATCCCCCACAGGCCTCTCTTTTCTGTATTAGGCTTTGCTCTGC
AGCCTTGAGTTAATTTCACCCCTGCTGCTTTGTCTTGGGGGAGGGAGTGCTGGTTTAGGC
TGTTGTGAGGAGATGACTGTTCTGCTGCCACACACAATAGTCATGTCATTTTATCGGGAG
TGCTACCCCAGGGCTGAGAACTGCTGCTGCAGAGATAAACCCGTCCCTCTCACCCGCCTA
TTGTGTACACAGTGAAGGTCATAGGTTCAAGTCTTGTCTGAGAGCTTTGGATATGCTCCA
TCTCCCAGGCTCCTCAGTGCCATTTTCTTCCTTTTCCAGACTGGGGCTTGCCATTGGAGG
AG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               108-297, + strand, RNAz p=0.809763
               

               
               120-278, - strand, RNAz p=0.993649

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-297, + strand, RNAz p=0.809763
               

               
               120-278, - strand, RNAz p=0.993649

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               287-376, + strand, RNAmicro p=0.988402
               

               
               63-163, - strand, RNAmicro p=0.966179

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               287-376, + strand, RNAmicro p=0.988402
               

               
               63-163, - strand, RNAmicro p=0.966179

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-542, gnl|bosTau2|chr10 (30392716-30393258)
               

               
               1-542, gnl|canFam2|chr30 (31909812-31910756)
               

               
               1-542, gnl|dasNov1|scaffold_40289 (7891-6964)
               

               
               1-542, gnl|echTel1|scaffold_167760 (7218-6318)
               

               
               1-542, gnl|hg17|chr15 (62540754-62541700)
               

               
               1-542, gnl|Hg17|chr15 (62540875-62541416)
               

               
               1-542, gnl|loxAfr1|scaffold_1222 (52540-51600)
               

               
               1-542, gnl|mm7|chr9 (65856491-65855542)
               

               
               1-542, gnl|Mm7|chr9 (65856368-65855830)
               

               
               1-542, gnl|monDom2|scaffold_12 (48966101-48965169)
               

               
               1-542, gnl|oryCun1|scaffold_212189 (82401-81461)
               

               
               1-542, gnl|panTro1|chr16 (63007524-63008470)
               

               
               1-542, gnl|rheMac2|chr7 (42904029-42904976)
               

               
               1-542, gnl|rn3|chr8 (70102961-70102008)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-542, gnl|bosTau2|chr10 (30392716-30393258)
               

               
               1-542, gnl|canFam2|chr30 (31909812-31910756)
               

               
               1-542, gnl|dasNov1|scaffold_40289 (7891-6964)
               

               
               1-542, gnl|echTel1|scaffold_167760 (7218-6318)
               

               
               1-542, gnl|hg17|chr15 (62540754-62541700)
               

               
               1-542, gnl|Hg17|chr15 (62540875-62541416)
               

               
               1-542, gnl|loxAfr1|scaffold_1222 (52540-51600)
               

               
               1-542, gnl|mm7|chr9 (65856491-65855542)
               

               
               1-542, gnl|Mm7|chr9 (65856368-65855830)
               

               
               1-542, gnl|monDom2|scaffold_12 (48966101-48965169)
               

               
               1-542, gnl|oryCun1|scaffold_212189 (82401-81461)
               

               
               1-542, gnl|panTro1|chr16 (63007524-63008470)
               

               
               1-542, gnl|rheMac2|chr7 (42904029-42904976)
               

               
               1-542, gnl|rn3|chr8 (70102961-70102008)

	108-297, + strand, RNAz p=0.809763
	120-278, - strand, RNAz p=0.993649

	287-376, + strand, RNAmicro p=0.988402
	63-163, - strand, RNAmicro p=0.966179

	1-542, gnl\|bosTau2\|chr10 (30392716-30393258)
	1-542, gnl\|canFam2\|chr30 (31909812-31910756)
	1-542, gnl\|dasNov1\|scaffold_40289 (7891-6964)
	1-542, gnl\|echTel1\|scaffold_167760 (7218-6318)
	1-542, gnl\|hg17\|chr15 (62540754-62541700)
	1-542, gnl\|Hg17\|chr15 (62540875-62541416)
	1-542, gnl\|loxAfr1\|scaffold_1222 (52540-51600)
	1-542, gnl\|mm7\|chr9 (65856491-65855542)
	1-542, gnl\|Mm7\|chr9 (65856368-65855830)
	1-542, gnl\|monDom2\|scaffold_12 (48966101-48965169)
	1-542, gnl\|oryCun1\|scaffold_212189 (82401-81461)
	1-542, gnl\|panTro1\|chr16 (63007524-63008470)
	1-542, gnl\|rheMac2\|chr7 (42904029-42904976)
	1-542, gnl\|rn3\|chr8 (70102961-70102008)