Non-Coding RNA Search

Pig2-81D11

Sequence:


               
               AACCCAGCCTCACCCAGGGCAGCCCCCATTCCAGCCTCACCCAGGGCAGAAGCCCCTGGC
TCCTCCCAGCCCCATGGGGCTGGAGGAGGCAGTAGTTCGGGCGGCAAGAAATGCTACAAG
TTGGAGAATGAGAAGCTGTTTAAAGAGTTCCTTGAACTGTGTAGGAGGCAGACAGCAGAC
CACCCTGAGGTGGTCCCGTTCCTCTCTAGCCGGCAGCAGCGGGCCCACTCACTGTTTTTG
GCCTCGGCGGAGTTCCACAACATCCTCTCTCGGGTCCTTTCCCGGGCTCAGAGCCGGCCC
GCCAAGCTCTATGTCTACATTAACGAGCTCTGCACTGTTCTCAAGGCCAACTCGGCCAAG
AAGAAGATGAACCTGGCCCCTGCTGCCACCACCTCTAGTGAGCCCTCCGGGAATGACCCC
CCCACAGGCCCCTCCTCGGACCCCATAAATGCTGAGACCACTGCCTCTGAGGCCCCAAGG
ACCCGTGGTTCCCGGCGGCAGATCCAGCGCTTGGAGCAGCTTCTTGCGCTCTATGTGGCA
GAGATCCGGCGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCAGCCTCACCCAGGGCAGCCCCCATTCCAGCCTCACCCAGGGCAGAAGCCCCTGGC
TCCTCCCAGCCCCATGGGGCTGGAGGAGGCAGTAGTTCGGGCGGCAAGAAATGCTACAAG
TTGGAGAATGAGAAGCTGTTTAAAGAGTTCCTTGAACTGTGTAGGAGGCAGACAGCAGAC
CACCCTGAGGTGGTCCCGTTCCTCTCTAGCCGGCAGCAGCGGGCCCACTCACTGTTTTTG
GCCTCGGCGGAGTTCCACAACATCCTCTCTCGGGTCCTTTCCCGGGCTCAGAGCCGGCCC
GCCAAGCTCTATGTCTACATTAACGAGCTCTGCACTGTTCTCAAGGCCAACTCGGCCAAG
AAGAAGATGAACCTGGCCCCTGCTGCCACCACCTCTAGTGAGCCCTCCGGGAATGACCCC
CCCACAGGCCCCTCCTCGGACCCCATAAATGCTGAGACCACTGCCTCTGAGGCCCCAAGG
ACCCGTGGTTCCCGGCGGCAGATCCAGCGCTTGGAGCAGCTTCTTGCGCTCTATGTGGCA
GAGATCCGGCGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52430419|gb|AAU50680.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52430419|gb|AAU50680.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               225-504, - strand, RNAz p=0.916195

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-504, - strand, RNAz p=0.916195

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               146-554, gnl|bosTau2|chr23 (5853809-5853404)
               

               
               146-554, gnl|Hg17|chr6 (33397324-33396916)
               

               
               146-554, gnl|Mm7|chr17 (31989760-31990168)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-554, gnl|bosTau2|chr23 (5853809-5853404)
               

               
               146-554, gnl|Hg17|chr6 (33397324-33396916)
               

               
               146-554, gnl|Mm7|chr17 (31989760-31990168)

	146-554, gnl\|bosTau2\|chr23 (5853809-5853404)
	146-554, gnl\|Hg17\|chr6 (33397324-33396916)
	146-554, gnl\|Mm7\|chr17 (31989760-31990168)