Non-Coding RNA Search

Pig2-83J07

Sequence:


               
               GTGCGCTGTCAACCTGTGCCATTGGCATATGCGTGGATGCGGAGACTGCTTTGGAGACTG
GGGGTGGGGGTGGGGGCTAGATGCACTCAGAGAAGGGAAGAAGGGGCCCGCACAGGATGC
TGGGCCCTGCCTGGTTAGGGGCACTCAGTCAAGGCCAGTCCTTTCCTGGGTATTTATTCT
CTATTTATTGGGGGACAGGAGAAGAAGAGCCCCACCTGGGGGGGGCAGCTCCTCCAGCCC
TTCCTTGCCTCCCTGCCTGGCCACTCTACCTCCTCTTTGCTTTTTCTGTGCCACTGTGAT
GCGGAGGCTGGGAGAATAGCAGAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCGCTGTCAACCTGTGCCATTGGCATATGCGTGGATGCGGAGACTGCTTTGGAGACTG
GGGGTGGGGGTGGGGGCTAGATGCACTCAGAGAAGGGAAGAAGGGGCCCGCACAGGATGC
TGGGCCCTGCCTGGTTAGGGGCACTCAGTCAAGGCCAGTCCTTTCCTGGGTATTTATTCT
CTATTTATTGGGGGACAGGAGAAGAAGAGCCCCACCTGGGGGGGGCAGCTCCTCCAGCCC
TTCCTTGCCTCCCTGCCTGGCCACTCTACCTCCTCTTTGCTTTTTCTGTGCCACTGTGAT
GCGGAGGCTGGGAGAATAGCAGAGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-271, + strand, RNAz p=0.999284

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-271, + strand, RNAz p=0.999284

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               86-271, 193646 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE723733.1|), 
blast E-value=6e-26, identity=83.42% 
               

               
               88-193, UI-H-DT1-awk-n-19-0-UI.s1 NCI_CGAP_DT1 Homo sapiens cDNA clone 
(gb|CA444319.1|), blast E-value=4e-21, identity=88.79% 
               

               
               88-193, UI-CF-FN0-afw-p-09-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CB240860.1|), blast E-value=4e-21, identity=88.79% 
               

               
               86-193, 4099045 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 3', mRNA 
(gb|CK958330.1|), blast E-value=9e-25, identity=89.91% 
               

               
               86-193, 4099429 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 5', mRNA 
(gb|CK958599.1|), blast E-value=4e-27, identity=90.83% 
               

               
               86-271, BovGen_10368 normal cattle brain Bos taurus cDNA clone (gb|CO882043.1|), 
blast E-value=6e-26, identity=83.42%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               86-271, 193646 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE723733.1|), 
blast E-value=6e-26, identity=83.42% 
               

               
               88-193, UI-H-DT1-awk-n-19-0-UI.s1 NCI_CGAP_DT1 Homo sapiens cDNA clone 
(gb|CA444319.1|), blast E-value=4e-21, identity=88.79% 
               

               
               88-193, UI-CF-FN0-afw-p-09-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone 
(gb|CB240860.1|), blast E-value=4e-21, identity=88.79% 
               

               
               86-193, 4099045 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 3', mRNA 
(gb|CK958330.1|), blast E-value=9e-25, identity=89.91% 
               

               
               86-193, 4099429 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 5', mRNA 
(gb|CK958599.1|), blast E-value=4e-27, identity=90.83% 
               

               
               86-271, BovGen_10368 normal cattle brain Bos taurus cDNA clone (gb|CO882043.1|), 
blast E-value=6e-26, identity=83.42%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004186, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004186, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-327, gnl|bosTau2|chr22 (38437381-38437701)
               

               
               9-327, gnl|Hg17|chr3 (50200942-50201265)
               

               
               9-327, gnl|Mm7|chr9 (107411497-107411185)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-327, gnl|bosTau2|chr22 (38437381-38437701)
               

               
               9-327, gnl|Hg17|chr3 (50200942-50201265)
               

               
               9-327, gnl|Mm7|chr9 (107411497-107411185)

	86-271, 193646 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE723733.1\|), blast E-value=6e-26, identity=83.42%
	88-193, UI-H-DT1-awk-n-19-0-UI.s1 NCI_CGAP_DT1 Homo sapiens cDNA clone (gb\|CA444319.1\|), blast E-value=4e-21, identity=88.79%
	88-193, UI-CF-FN0-afw-p-09-0-UI.s1 UI-CF-FN0 Homo sapiens cDNA clone (gb\|CB240860.1\|), blast E-value=4e-21, identity=88.79%
	86-193, 4099045 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 3', mRNA (gb\|CK958330.1\|), blast E-value=9e-25, identity=89.91%
	86-193, 4099429 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 5', mRNA (gb\|CK958599.1\|), blast E-value=4e-27, identity=90.83%
	86-271, BovGen_10368 normal cattle brain Bos taurus cDNA clone (gb\|CO882043.1\|), blast E-value=6e-26, identity=83.42%

	9-327, gnl\|bosTau2\|chr22 (38437381-38437701)
	9-327, gnl\|Hg17\|chr3 (50200942-50201265)
	9-327, gnl\|Mm7\|chr9 (107411497-107411185)