Non-Coding RNA Search

Pig2-83O05

Sequence:


               
               GTCCAGAGTCCTGGATTCCCGGGCTATCTCCGTCAAGAGATGCAGGCAGCTGCTGCCCTC
TGGGCCTCAGTTTCCCCTGTGAAAAGACCTCTGCATAGTAGCAACTCAGTAAATGTGAGT
AAAATTTAGCAAATACTGCAGTAATCTGCGTAGGCCTGTGCTGAGTTCAACAATAACACA
AAAACACACACACACACACACACACCACCAACCAGGACATTCGGCGCAGAAAGGGAGGGC
TGGGTGTCAGAGACAGCAGTGGGGGCCTGAGCCTAGAGGAGGAGGTGCAGCAGGACTGGT
GAGCAGTCGGGTGTTGTGGGGAAACAGGCCCCGCCTGGAGCCCCAGATAGACTTGAGCCC
CGCCTGCAGCCTCTTAAAATAGAGAAACTGCCTTCGGGTAGGCGAATGGGGGTGCAGCTG
ACGTCAGAAAGTGGGGGCCGTTCCATGGCGAAGAGGCACCCATTCCTTAATGATGAGTCC
CATGTTACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAGAGTCCTGGATTCCCGGGCTATCTCCGTCAAGAGATGCAGGCAGCTGCTGCCCTC
TGGGCCTCAGTTTCCCCTGTGAAAAGACCTCTGCATAGTAGCAACTCAGTAAATGTGAGT
AAAATTTAGCAAATACTGCAGTAATCTGCGTAGGCCTGTGCTGAGTTCAACAATAACACA
AAAACACACACACACACACACACACCACCAACCAGGACATTCGGCGCAGAAAGGGAGGGC
TGGGTGTCAGAGACAGCAGTGGGGGCCTGAGCCTAGAGGAGGAGGTGCAGCAGGACTGGT
GAGCAGTCGGGTGTTGTGGGGAAACAGGCCCCGCCTGGAGCCCCAGATAGACTTGAGCCC
CGCCTGCAGCCTCTTAAAATAGAGAAACTGCCTTCGGGTAGGCGAATGGGGGTGCAGCTG
ACGTCAGAAAGTGGGGGCCGTTCCATGGCGAAGAGGCACCCATTCCTTAATGATGAGTCC
CATGTTACAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               228-343, + strand, RNAz p=0.968314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-343, + strand, RNAz p=0.968314

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-193, gnl|bosTau2|chr7 (4367144-4366940)
               

               
               1-193, gnl|Hg17|chr19 (18076481-18076689)
               


               
               228-491, gnl|bosTau2|chr7 (4370420-4370162)
               

               
               228-491, gnl|Hg17|chr19 (18071095-18071356)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-193, gnl|bosTau2|chr7 (4367144-4366940)
               

               
               1-193, gnl|Hg17|chr19 (18076481-18076689)
               


               
               228-491, gnl|bosTau2|chr7 (4370420-4370162)
               

               
               228-491, gnl|Hg17|chr19 (18071095-18071356)

	1-193, gnl\|bosTau2\|chr7 (4367144-4366940)
	1-193, gnl\|Hg17\|chr19 (18076481-18076689)

	228-491, gnl\|bosTau2\|chr7 (4370420-4370162)
	228-491, gnl\|Hg17\|chr19 (18071095-18071356)