Non-Coding RNA Search

Pig2-85P17

Sequence:


               
               CCACGCGTCCGGGGTCTTAAGAGCTGCTCTTCTAGCCCAATACACATACTCTTTTTGTCT
TTGTGCAATAATCATTGTTCCTGGCAGAGCCTGGGCCGAGCTGGGGTCTGGGTGGGAGGC
ATACACCGCCTCCTCCTGGAAGCCCTCTACCTGGCCCTGCTGCCGTGACTATCGCACTCC
CAGTTGCTGTACAGTTTCTATGGTGTGAATGAACTTCCCTCCTAGTTGCTGATGGCGCTG
GTACCTGCTGGCCCAGATGGCCCGGGGTAGATAAAACCTGTGGCACCCGCCACCAGTGTT
GTTTTGAATAAAACCCAGAAGCCTATTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGGGGTCTTAAGAGCTGCTCTTCTAGCCCAATACACATACTCTTTTTGTCT
TTGTGCAATAATCATTGTTCCTGGCAGAGCCTGGGCCGAGCTGGGGTCTGGGTGGGAGGC
ATACACCGCCTCCTCCTGGAAGCCCTCTACCTGGCCCTGCTGCCGTGACTATCGCACTCC
CAGTTGCTGTACAGTTTCTATGGTGTGAATGAACTTCCCTCCTAGTTGCTGATGGCGCTG
GTACCTGCTGGCCCAGATGGCCCGGGGTAGATAAAACCTGTGGCACCCGCCACCAGTGTT
GTTTTGAATAAAACCCAGAAGCCTATTTCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               50-166, - strand, RNAz p=0.989609

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-166, - strand, RNAz p=0.989609

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               69-193, - strand, RNAmicro p=0.999965
               

               
               66-180, + strand, RNAmicro p=0.999903

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               69-193, - strand, RNAmicro p=0.999965
               

               
               66-180, + strand, RNAmicro p=0.999903

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               11-331, gnl|bosTau2|chr5 (68421235-68420915)
               

               
               11-331, gnl|Hg17|chr22 (38409918-38410238)
               

               
               11-331, gnl|Mm7|chr15 (80482446-80482768)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-331, gnl|bosTau2|chr5 (68421235-68420915)
               

               
               11-331, gnl|Hg17|chr22 (38409918-38410238)
               

               
               11-331, gnl|Mm7|chr15 (80482446-80482768)

	69-193, - strand, RNAmicro p=0.999965
	66-180, + strand, RNAmicro p=0.999903

	11-331, gnl\|bosTau2\|chr5 (68421235-68420915)
	11-331, gnl\|Hg17\|chr22 (38409918-38410238)
	11-331, gnl\|Mm7\|chr15 (80482446-80482768)