Non-Coding RNA Search

Pig2-86A03

Sequence:


               
               TGAAGCTGGATGGAGGCCCAAGATGGCGGCGCGCTGGGAGCGTAACATCTGCGTTTCTAG
GATCTTCGTGCTGCGCGTGGCTTAAGAGTCTGGGTTTGTAGAGGCCCACACCAAACTAGT
CGTCTGGCAGGAGCTTTGACATCAGAGTCTGAATTTTAAAGACCCTGAAGCAGTCAGAGC
TCTGACTTGTACTCTCCTAAGGGAAGATTTTGGACTTTCCATTGATATTCCATTGGAGAG
ACTAATTCCCACAGTTCCCTTGAGACTCAACTATATTCATTGGGTAGAAGATCTGATTGG
TCATCACGACTCTGACAAAAGTACTCTCCGAAGAGGAATTGACATAGGTACTGGGGCATC
CTGCATCTATCCTTTACTCGGAACAACCTTAAACGGCTGGTATTTCCTTGCAACAGAAGT
AGATGACATGTGCTTCAACTATGCAAAGAAGAATGTGGAACAGAATAACTTATCTGATCT
TATAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGCTGGATGGAGGCCCAAGATGGCGGCGCGCTGGGAGCGTAACATCTGCGTTTCTAG
GATCTTCGTGCTGCGCGTGGCTTAAGAGTCTGGGTTTGTAGAGGCCCACACCAAACTAGT
CGTCTGGCAGGAGCTTTGACATCAGAGTCTGAATTTTAAAGACCCTGAAGCAGTCAGAGC
TCTGACTTGTACTCTCCTAAGGGAAGATTTTGGACTTTCCATTGATATTCCATTGGAGAG
ACTAATTCCCACAGTTCCCTTGAGACTCAACTATATTCATTGGGTAGAAGATCTGATTGG
TCATCACGACTCTGACAAAAGTACTCTCCGAAGAGGAATTGACATAGGTACTGGGGCATC
CTGCATCTATCCTTTACTCGGAACAACCTTAAACGGCTGGTATTTCCTTGCAACAGAAGT
AGATGACATGTGCTTCAACTATGCAAAGAAGAATGTGGAACAGAATAACTTATCTGATCT
TATAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12654743|gb|AAH01213.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12654743|gb|AAH01213.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-264, - strand, RNAz p=0.641433

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-264, - strand, RNAz p=0.641433

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               145-488, gnl|bosTau2|chr7 (27144621-27144964)
               

               
               145-488, gnl|Hg17|chr17 (2327931-2317921)
               

               
               145-488, gnl|Mm7|chr11 (74865630-74873776)
               


               
               146-351, gnl|bosTau2|chr19 (17992777-17992572)
               

               
               146-351, gnl|Hg17|chr17 (2327931-2327726)
               

               
               146-351, gnl|Mm7|chr11 (74865630-74865835)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-488, gnl|bosTau2|chr7 (27144621-27144964)
               

               
               145-488, gnl|Hg17|chr17 (2327931-2317921)
               

               
               145-488, gnl|Mm7|chr11 (74865630-74873776)
               


               
               146-351, gnl|bosTau2|chr19 (17992777-17992572)
               

               
               146-351, gnl|Hg17|chr17 (2327931-2327726)
               

               
               146-351, gnl|Mm7|chr11 (74865630-74865835)

	145-488, gnl\|bosTau2\|chr7 (27144621-27144964)
	145-488, gnl\|Hg17\|chr17 (2327931-2317921)
	145-488, gnl\|Mm7\|chr11 (74865630-74873776)

	146-351, gnl\|bosTau2\|chr19 (17992777-17992572)
	146-351, gnl\|Hg17\|chr17 (2327931-2327726)
	146-351, gnl\|Mm7\|chr11 (74865630-74865835)