Non-Coding RNA Search

Pig2-86A20

Sequence:


               
               AGGCAAGGCTGTTGAGGAAAAGGAGCCAGACCAAGGAGCCTTCCAGGAGAGAGATGCCCG
AGGAGGAGCAGGGGCTGACCTGCCTGAGGGTGGCCAGGAGGAAGGATTTGCAGCCCAGGG
CCCTCCTGACCCTATGCAGACACCCAGCAGGACTGGCGGGGAAGCAGAATGGAGCTGTAG
CAGCCCAAGACACTCTCCCCTTGGACCTGTGGTCATAGCAGATGTGAACATAGACCCCAC
TGAGCCGGAACAGAGGACTCTGAAGGTGGCCGGGCCAGGCAGGGAGGTCAACACTAGGGT
GCCCGCCTCTCCCAGTGGGAAGGCTCCTGATGGAGGCCGCAGCAGGGCCCTGCCTGTCTG
CATGCCTCTCGCTGGGGAGATCACAGGGGGCAAAGGGGAGGCCAGGAATGAAGACAAGCC
CCCTGGTGATGTCCCAGGGGTCCTAGGAGCCTCCCTGGCTCTAGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCAAGGCTGTTGAGGAAAAGGAGCCAGACCAAGGAGCCTTCCAGGAGAGAGATGCCCG
AGGAGGAGCAGGGGCTGACCTGCCTGAGGGTGGCCAGGAGGAAGGATTTGCAGCCCAGGG
CCCTCCTGACCCTATGCAGACACCCAGCAGGACTGGCGGGGAAGCAGAATGGAGCTGTAG
CAGCCCAAGACACTCTCCCCTTGGACCTGTGGTCATAGCAGATGTGAACATAGACCCCAC
TGAGCCGGAACAGAGGACTCTGAAGGTGGCCGGGCCAGGCAGGGAGGTCAACACTAGGGT
GCCCGCCTCTCCCAGTGGGAAGGCTCCTGATGGAGGCCGCAGCAGGGCCCTGCCTGTCTG
CATGCCTCTCGCTGGGGAGATCACAGGGGGCAAAGGGGAGGCCAGGAATGAAGACAAGCC
CCCTGGTGATGTCCCAGGGGTCCTAGGAGCCTCCCTGGCTCTAGCTCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-106, + strand, RNAz p=1
               

               
               230-468, - strand, RNAz p=0.977741

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-106, + strand, RNAz p=1
               

               
               230-468, - strand, RNAz p=0.977741

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-468, gnl|bosTau2|chr7 (7910854-7911339)
               

               
               1-468, gnl|Hg17|chr19 (13861955-13861401)
               

               
               1-468, gnl|Mm7|chr8 (82749174-82749653)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr7 (7910854-7911339)
               

               
               1-468, gnl|Hg17|chr19 (13861955-13861401)
               

               
               1-468, gnl|Mm7|chr8 (82749174-82749653)

	1-468, gnl\|bosTau2\|chr7 (7910854-7911339)
	1-468, gnl\|Hg17\|chr19 (13861955-13861401)
	1-468, gnl\|Mm7\|chr8 (82749174-82749653)