Non-Coding RNA Search

Pig2-86E21

Sequence:


               
               AGCACCCTCTGGCCCCACAATCGGCAAACTAGGATGGAAGTGGCCTAGCTGGGGGGCCCT
TCGATGGGCCAAGGGAGAAAACGCAGGCAGTGGCACCAGCCTCTGAAGCCGTCTCCGAGC
TCCAATAATCTTCGCTTGCCTCCCCCCTTGAAATGTCCCAATGGACAGACTTTCTGTCTT
CAAAGCTTCGGGCCAAACCTCTTCAAGCTTTTTATTGTTTGGGACTGGGACGCTTAGCAA
TAATGATGGGTAGTTCCTTTTTTATTTGAAAGGCCAAAATATATTTTTGTGTGTGTGACT
ATAGACAAAGCCGTCTGCTTTCAGATGAACTCTGTCCGTCGTCTCCCACCAGGGAGGTTG
TATATACCATGTGTGTCTCTGTGTACTCTTGGGTCTTGAAACAGGTTTCTCATAGGGATG
ACCATTCACAGGGGTCCTTGGGGAAGCGCCTGCCCCACCAGCGGGCCTGGGGAGCCCGAC
CCCTGTGTGCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACCCTCTGGCCCCACAATCGGCAAACTAGGATGGAAGTGGCCTAGCTGGGGGGCCCT
TCGATGGGCCAAGGGAGAAAACGCAGGCAGTGGCACCAGCCTCTGAAGCCGTCTCCGAGC
TCCAATAATCTTCGCTTGCCTCCCCCCTTGAAATGTCCCAATGGACAGACTTTCTGTCTT
CAAAGCTTCGGGCCAAACCTCTTCAAGCTTTTTATTGTTTGGGACTGGGACGCTTAGCAA
TAATGATGGGTAGTTCCTTTTTTATTTGAAAGGCCAAAATATATTTTTGTGTGTGTGACT
ATAGACAAAGCCGTCTGCTTTCAGATGAACTCTGTCCGTCGTCTCCCACCAGGGAGGTTG
TATATACCATGTGTGTCTCTGTGTACTCTTGGGTCTTGAAACAGGTTTCTCATAGGGATG
ACCATTCACAGGGGTCCTTGGGGAAGCGCCTGCCCCACCAGCGGGCCTGGGGAGCCCGAC
CCCTGTGTGCACAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               253-365, - strand, RNAz p=0.621711
               

               
               376-494, - strand, RNAz p=0.993593

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-365, - strand, RNAz p=0.621711
               

               
               376-494, - strand, RNAz p=0.993593

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF090934, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF090934, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               23-494, gnl|bosTau2|chr21 (45538913-45539388)
               

               
               23-494, gnl|canFam2|chr8 (72114993-72115569)
               

               
               23-494, gnl|dasNov1|scaffold_81357 (2287-1736)
               

               
               23-494, gnl|hg17|chr14 (100381807-100382380)
               

               
               23-494, gnl|Hg17|chr14 (100381966-100382473)
               

               
               23-494, gnl|loxAfr1|scaffold_15889 (4968-4400)
               

               
               23-494, gnl|mm7|chr12 (107079710-107080272)
               

               
               23-494, gnl|Mm7|chr12 (107079865-107080366)
               

               
               23-494, gnl|monDom2|scaffold_6 (83090627-83091209)
               

               
               23-494, gnl|oryCun1|scaffold_189948 (6851-7377)
               

               
               23-494, gnl|panTro1|chr15 (100939345-100939918)
               

               
               23-494, gnl|rheMac2|chr7 (164128616-164129187)
               

               
               23-494, gnl|rn3|chr6 (134141648-134142206)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-494, gnl|bosTau2|chr21 (45538913-45539388)
               

               
               23-494, gnl|canFam2|chr8 (72114993-72115569)
               

               
               23-494, gnl|dasNov1|scaffold_81357 (2287-1736)
               

               
               23-494, gnl|hg17|chr14 (100381807-100382380)
               

               
               23-494, gnl|Hg17|chr14 (100381966-100382473)
               

               
               23-494, gnl|loxAfr1|scaffold_15889 (4968-4400)
               

               
               23-494, gnl|mm7|chr12 (107079710-107080272)
               

               
               23-494, gnl|Mm7|chr12 (107079865-107080366)
               

               
               23-494, gnl|monDom2|scaffold_6 (83090627-83091209)
               

               
               23-494, gnl|oryCun1|scaffold_189948 (6851-7377)
               

               
               23-494, gnl|panTro1|chr15 (100939345-100939918)
               

               
               23-494, gnl|rheMac2|chr7 (164128616-164129187)
               

               
               23-494, gnl|rn3|chr6 (134141648-134142206)

	253-365, - strand, RNAz p=0.621711
	376-494, - strand, RNAz p=0.993593

	23-494, gnl\|bosTau2\|chr21 (45538913-45539388)
	23-494, gnl\|canFam2\|chr8 (72114993-72115569)
	23-494, gnl\|dasNov1\|scaffold_81357 (2287-1736)
	23-494, gnl\|hg17\|chr14 (100381807-100382380)
	23-494, gnl\|Hg17\|chr14 (100381966-100382473)
	23-494, gnl\|loxAfr1\|scaffold_15889 (4968-4400)
	23-494, gnl\|mm7\|chr12 (107079710-107080272)
	23-494, gnl\|Mm7\|chr12 (107079865-107080366)
	23-494, gnl\|monDom2\|scaffold_6 (83090627-83091209)
	23-494, gnl\|oryCun1\|scaffold_189948 (6851-7377)
	23-494, gnl\|panTro1\|chr15 (100939345-100939918)
	23-494, gnl\|rheMac2\|chr7 (164128616-164129187)
	23-494, gnl\|rn3\|chr6 (134141648-134142206)