Non-Coding RNA Search

Pig2-86K01

Sequence:


               
               GTGTTAAACAAATAGAAAATAAATGACTGCATTGCATGAAAGCCTGTGCTGGGCTTTATT
TTCCATGTGACCTTATTTCTTACAGACTTTAATCGTCTAAATTAACACCACAGAATCCAT
TACCCCAGGACCCCTTGGGGTCTTTATCCCCTCAATGCACCACACCCTCTTTCTCTGGAT
TCTTTGTCTGGTTCTCATCCTCTCTCTGGTTCTGTAAAGACGCTATGCTCCCCAGTCTCT
CATTAAGGTGTATTGTCAGGTCCTTATGAAGATGGAGCTGTTATTCAAGAAAGGAAGAGA
GAGACACACTCGCTTAGAAACCCTGTTCAATGTTTGAATGTTAAATGTGCCATTTTATTA
TCATTAGGATTGCTCCCACTTAATGAAACGGCATTAACACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTAAACAAATAGAAAATAAATGACTGCATTGCATGAAAGCCTGTGCTGGGCTTTATT
TTCCATGTGACCTTATTTCTTACAGACTTTAATCGTCTAAATTAACACCACAGAATCCAT
TACCCCAGGACCCCTTGGGGTCTTTATCCCCTCAATGCACCACACCCTCTTTCTCTGGAT
TCTTTGTCTGGTTCTCATCCTCTCTCTGGTTCTGTAAAGACGCTATGCTCCCCAGTCTCT
CATTAAGGTGTATTGTCAGGTCCTTATGAAGATGGAGCTGTTATTCAAGAAAGGAAGAGA
GAGACACACTCGCTTAGAAACCCTGTTCAATGTTTGAATGTTAAATGTGCCATTTTATTA
TCATTAGGATTGCTCCCACTTAATGAAACGGCATTAACACCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-197, - strand, RNAz p=0.847624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.847624

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-402, gnl|bosTau2|chr19 (13960826-13961218)
               

               
               1-402, gnl|canFam2|chr9 (46538341-46538884)
               

               
               1-402, gnl|dasNov1|scaffold_65616 (991-457)
               

               
               1-402, gnl|echTel1|scaffold_308103 (5823-5291)
               

               
               1-402, gnl|hg17|chr17 (24408316-24408838)
               

               
               1-402, gnl|Hg17|chr17 (24408344-24408725)
               

               
               1-402, gnl|mm7|chr11 (77962256-77961715)
               

               
               1-402, gnl|Mm7|chr11 (77962228-77961827)
               

               
               1-402, gnl|monDom2|scaffold_44 (15060376-15060858)
               

               
               1-402, gnl|oryCun1|scaffold_206953 (82168-82705)
               

               
               1-402, gnl|panTro1|chr19 (27753795-27754317)
               

               
               1-402, gnl|rheMac2|chr16 (24276523-24277045)
               

               
               1-402, gnl|rn3|chr10 (63934498-63933956)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-402, gnl|bosTau2|chr19 (13960826-13961218)
               

               
               1-402, gnl|canFam2|chr9 (46538341-46538884)
               

               
               1-402, gnl|dasNov1|scaffold_65616 (991-457)
               

               
               1-402, gnl|echTel1|scaffold_308103 (5823-5291)
               

               
               1-402, gnl|hg17|chr17 (24408316-24408838)
               

               
               1-402, gnl|Hg17|chr17 (24408344-24408725)
               

               
               1-402, gnl|mm7|chr11 (77962256-77961715)
               

               
               1-402, gnl|Mm7|chr11 (77962228-77961827)
               

               
               1-402, gnl|monDom2|scaffold_44 (15060376-15060858)
               

               
               1-402, gnl|oryCun1|scaffold_206953 (82168-82705)
               

               
               1-402, gnl|panTro1|chr19 (27753795-27754317)
               

               
               1-402, gnl|rheMac2|chr16 (24276523-24277045)
               

               
               1-402, gnl|rn3|chr10 (63934498-63933956)

	1-402, gnl\|bosTau2\|chr19 (13960826-13961218)
	1-402, gnl\|canFam2\|chr9 (46538341-46538884)
	1-402, gnl\|dasNov1\|scaffold_65616 (991-457)
	1-402, gnl\|echTel1\|scaffold_308103 (5823-5291)
	1-402, gnl\|hg17\|chr17 (24408316-24408838)
	1-402, gnl\|Hg17\|chr17 (24408344-24408725)
	1-402, gnl\|mm7\|chr11 (77962256-77961715)
	1-402, gnl\|Mm7\|chr11 (77962228-77961827)
	1-402, gnl\|monDom2\|scaffold_44 (15060376-15060858)
	1-402, gnl\|oryCun1\|scaffold_206953 (82168-82705)
	1-402, gnl\|panTro1\|chr19 (27753795-27754317)
	1-402, gnl\|rheMac2\|chr16 (24276523-24277045)
	1-402, gnl\|rn3\|chr10 (63934498-63933956)