Non-Coding RNA Search

Pig2-86N12

Sequence:


               
               GGAGAGTTTCCAGTGTCTGACTGTGGTTGTACAACAGGCAGTAGACATGAGGAAACCCTT
AACTTTAATGGTATTTTGTTGCTATGGCAATGGAAGGTACTTAATGCTGAGATTCAATAT
CAATAGCTAAAGATATATGAAATATATATGGATTCTTTCTCCCAAATGCAAACTAGGACC
TGAATGTCAACATGTATAGTAATAGGGGCTTTCTAAGAAAACAAAGAGTACCCCATGGAT
TAAGAATGTCTGTGGGGGGGCGAAAAGCATAGGTTCAAAGATATGTAAAAGTATATCCAT
ACACATTCTGTCTTTGTTCAAAAGGATGCACTTCTTTCTTGATCCCTCCAACAGAAGTCC
TAGAATTAAGTCAGTGGTCCGATTTGCATGACATGAACCAGTCACTGGGATAAGAATAGA
AGACACTGATTAGCGGGATTTGGGCCTTGTGCTCACCACTGAAGTGGAGCTAGTCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGTTTCCAGTGTCTGACTGTGGTTGTACAACAGGCAGTAGACATGAGGAAACCCTT
AACTTTAATGGTATTTTGTTGCTATGGCAATGGAAGGTACTTAATGCTGAGATTCAATAT
CAATAGCTAAAGATATATGAAATATATATGGATTCTTTCTCCCAAATGCAAACTAGGACC
TGAATGTCAACATGTATAGTAATAGGGGCTTTCTAAGAAAACAAAGAGTACCCCATGGAT
TAAGAATGTCTGTGGGGGGGCGAAAAGCATAGGTTCAAAGATATGTAAAAGTATATCCAT
ACACATTCTGTCTTTGTTCAAAAGGATGCACTTCTTTCTTGATCCCTCCAACAGAAGTCC
TAGAATTAAGTCAGTGGTCCGATTTGCATGACATGAACCAGTCACTGGGATAAGAATAGA
AGACACTGATTAGCGGGATTTGGGCCTTGTGCTCACCACTGAAGTGGAGCTAGTCCTTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               18-122, + strand, RNAz p=0.544373
               

               
               21-151, - strand, RNAz p=0.993918

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               18-122, + strand, RNAz p=0.544373
               

               
               21-151, - strand, RNAz p=0.993918

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               18-302, gnl|bosTau2|chr4 (1042246-1042525)
               

               
               18-302, gnl|canFam2|chr14 (20834786-20835092)
               

               
               18-302, gnl|echTel1|scaffold_315813 (42977-43249)
               

               
               18-302, gnl|hg17|chr7 (91535980-91536291)
               

               
               18-302, gnl|Hg17|chr7 (91536096-91536389)
               

               
               18-302, gnl|mm7|chr5 (3796128-3795856)
               

               
               18-302, gnl|panTro1|chr6 (93091948-93092259)
               

               
               18-302, gnl|rheMac2|chr3 (124993534-124993223)
               

               
               18-302, gnl|rn3|chr4 (27083125-27083429)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-302, gnl|bosTau2|chr4 (1042246-1042525)
               

               
               18-302, gnl|canFam2|chr14 (20834786-20835092)
               

               
               18-302, gnl|echTel1|scaffold_315813 (42977-43249)
               

               
               18-302, gnl|hg17|chr7 (91535980-91536291)
               

               
               18-302, gnl|Hg17|chr7 (91536096-91536389)
               

               
               18-302, gnl|mm7|chr5 (3796128-3795856)
               

               
               18-302, gnl|panTro1|chr6 (93091948-93092259)
               

               
               18-302, gnl|rheMac2|chr3 (124993534-124993223)
               

               
               18-302, gnl|rn3|chr4 (27083125-27083429)

	18-122, + strand, RNAz p=0.544373
	21-151, - strand, RNAz p=0.993918

	18-302, gnl\|bosTau2\|chr4 (1042246-1042525)
	18-302, gnl\|canFam2\|chr14 (20834786-20835092)
	18-302, gnl\|echTel1\|scaffold_315813 (42977-43249)
	18-302, gnl\|hg17\|chr7 (91535980-91536291)
	18-302, gnl\|Hg17\|chr7 (91536096-91536389)
	18-302, gnl\|mm7\|chr5 (3796128-3795856)
	18-302, gnl\|panTro1\|chr6 (93091948-93092259)
	18-302, gnl\|rheMac2\|chr3 (124993534-124993223)
	18-302, gnl\|rn3\|chr4 (27083125-27083429)