Pig2-86P23
|
GGCCGCCCTTTTTTTTTAGCACATTCATGGAAGTTTAGGGCCTGGACGGTGCCCCCAAGT
CCGGCCTAAGAGTGCAGCCTGAGCTGCTGGCCGGGAAGAGGAAGATGTCTGTGCTCAGGC
GGATGATGCGGGTCTCCAATCGCTCCCTCCTCGCCTTCATCTTCTTCTTCTCCCTCTCCT
CGTCTTGCCTCTACTTCATCTATGTGGCTCCGGGTATCGCCAACACATATCTCTTTATGG
TACAAGCTCGAGGAATAATGTTGAGAGAAAATGTGAAAACAATAGGACATATGATCAGGC
TGTACACAAATAAAAACACTACGCTCAATGGTACAGATTATCCCGAAGGCAATAATTCAA
GTGATTATCTTGTTCAAACAACAACGTTTCTTCCGGAAAACTTCACATACTCGCCATACC
TCCCCTGCCCAGAAAAACTGCCTTACATGCGGCCAGAACTGCAACAGATGGAGGTTCCCA
AGGTAGGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCCGCCCTTTTTTTTTAGCACATTCATGGAAGTTTAGGGCCTGGACGGTGCCCCCAAGT
CCGGCCTAAGAGTGCAGCCTGAGCTGCTGGCCGGGAAGAGGAAGATGTCTGTGCTCAGGC
GGATGATGCGGGTCTCCAATCGCTCCCTCCTCGCCTTCATCTTCTTCTTCTCCCTCTCCT
CGTCTTGCCTCTACTTCATCTATGTGGCTCCGGGTATCGCCAACACATATCTCTTTATGG
TACAAGCTCGAGGAATAATGTTGAGAGAAAATGTGAAAACAATAGGACATATGATCAGGC
TGTACACAAATAAAAACACTACGCTCAATGGTACAGATTATCCCGAAGGCAATAATTCAA
GTGATTATCTTGTTCAAACAACAACGTTTCTTCCGGAAAACTTCACATACTCGCCATACC
TCCCCTGCCCAGAAAAACTGCCTTACATGCGGCCAGAACTGCAACAGATGGAGGTTCCCA
AGGTAGGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
71-190, + strand, RNAmicro p=0.937655 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
71-190, + strand, RNAmicro p=0.937655 |
|
11-219, gnl|bosTau2|chr24 (20137116-20137324) |
|
11-219, gnl|canFam2|chr7 (60831208-60830931) |
|
11-219, gnl|danRer3|chr23 (36995894-36996147) |
|
11-219, gnl|dasNov1|scaffold_21101 (13460-13184) |
|
11-219, gnl|echTel1|scaffold_278155 (47422-47669) |
|
11-219, gnl|hg17|chr18 (27518241-27518518) |
|
11-219, gnl|Hg17|chr18 (27518478-27518273) |
|
11-219, gnl|loxAfr1|scaffold_6457 (58139-57863) |
|
11-219, gnl|mm7|chr18 (21116039-21116316) |
|
11-219, gnl|Mm7|chr18 (21116276-21116071) |
|
11-219, gnl|monDom2|scaffold_4 (124494566-124494285) |
|
11-219, gnl|oryCun1|scaffold_203036 (243700-243423) |
|
11-219, gnl|panTro1|chr17 (23417618-23417895) |
|
11-219, gnl|rheMac2|chr18 (24605662-24605939) |
|
11-219, gnl|rn3|chr18 (12503508-12503776) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
11-219, gnl|bosTau2|chr24 (20137116-20137324) |
|
11-219, gnl|canFam2|chr7 (60831208-60830931) |
|
11-219, gnl|danRer3|chr23 (36995894-36996147) |
|
11-219, gnl|dasNov1|scaffold_21101 (13460-13184) |
|
11-219, gnl|echTel1|scaffold_278155 (47422-47669) |
|
11-219, gnl|hg17|chr18 (27518241-27518518) |
|
11-219, gnl|Hg17|chr18 (27518478-27518273) |
|
11-219, gnl|loxAfr1|scaffold_6457 (58139-57863) |
|
11-219, gnl|mm7|chr18 (21116039-21116316) |
|
11-219, gnl|Mm7|chr18 (21116276-21116071) |
|
11-219, gnl|monDom2|scaffold_4 (124494566-124494285) |
|
11-219, gnl|oryCun1|scaffold_203036 (243700-243423) |
|
11-219, gnl|panTro1|chr17 (23417618-23417895) |
|
11-219, gnl|rheMac2|chr18 (24605662-24605939) |
|
11-219, gnl|rn3|chr18 (12503508-12503776) |
