Non-Coding RNA Search

Pig2-87B06

Sequence:


               
               GCAAAACCACCACCCCAAAAGCAAGACTTTAGTCAAGGAGCAACCAAAAACACTAATCAA
AATTCTTCTGCTCACCCACCTCACTTAAATATGGATGACACAGTGAATCAGAGTAATATT
GAATTAAAAAATGTTAATCGAAATAATGTAGTAAATCAAGAGAATAGCCGTTCCAATAGC
ACTGAAGCTACAAACAACAGCCATGCAAATGGGACACAGAATAAGCCACGACAACCTAGA
GGTGCCACAGATACATGCACCANCTGAAAAAAGCAATAAATCCTCTCTCCACCCAAGCCG
TCACGGCCATTCTTCTTCTGATCCAGTGTATCCTTGTGGAATTTGTACAAATGAAGTGAA
TGATGATCAGGATGCCATCTTATGTGAAGCTTCTTGTCAGAAATGGTTTCATCGGATCTG
CACTGGAATGACTGAAACAGCCTATGGCCTCCTAACAGCAGAAGCATCAGCAGTGTGGGG
CTGTGATACCTGCATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAACCACCACCCCAAAAGCAAGACTTTAGTCAAGGAGCAACCAAAAACACTAATCAA
AATTCTTCTGCTCACCCACCTCACTTAAATATGGATGACACAGTGAATCAGAGTAATATT
GAATTAAAAAATGTTAATCGAAATAATGTAGTAAATCAAGAGAATAGCCGTTCCAATAGC
ACTGAAGCTACAAACAACAGCCATGCAAATGGGACACAGAATAAGCCACGACAACCTAGA
GGTGCCACAGATACATGCACCANCTGAAAAAAGCAATAAATCCTCTCTCCACCCAAGCCG
TCACGGCCATTCTTCTTCTGATCCAGTGTATCCTTGTGGAATTTGTACAAATGAAGTGAA
TGATGATCAGGATGCCATCTTATGTGAAGCTTCTTGTCAGAAATGGTTTCATCGGATCTG
CACTGGAATGACTGAAACAGCCTATGGCCTCCTAACAGCAGAAGCATCAGCAGTGTGGGG
CTGTGATACCTGCATGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4884173|emb|CAB43209.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4884173|emb|CAB43209.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-159, - strand, RNAz p=0.931195
               

               
               200-319, - strand, RNAz p=0.986847

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.931195
               

               
               200-319, - strand, RNAz p=0.986847

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-498, gnl|bosTau2|chr10 (38876244-38875748)
               

               
               1-498, gnl|canFam2|chr30 (23886323-23886734)
               

               
               1-498, gnl|danRer3|chr11 (10499908-10499572)
               

               
               1-498, gnl|dasNov1|scaffold_30344 (3683-3269)
               

               
               1-498, gnl|echTel1|scaffold_319681 (7365-7778)
               

               
               1-498, gnl|galGal2|chr10 (8422293-8421879)
               

               
               1-498, gnl|hg17|chr15 (53625490-53625904)
               

               
               1-498, gnl|Hg17|chr15 (53626079-53625583)
               

               
               1-498, gnl|loxAfr1|scaffold_773 (96571-96159)
               

               
               1-498, gnl|mm7|chr9 (72978310-72977899)
               

               
               1-498, gnl|Mm7|chr9 (72977725-72978215)
               

               
               1-498, gnl|monDom2|scaffold_12 (33143471-33143884)
               

               
               1-498, gnl|oryCun1|scaffold_159160 (8302-8716)
               

               
               1-498, gnl|panTro1|chr16_random (15811067-15810653)
               

               
               1-498, gnl|rheMac2|chr7 (33865926-33866340)
               

               
               1-498, gnl|rn3|chr8 (77839973-77839562)
               

               
               1-498, gnl|xenTro1|scaffold_1255 (27244-26850)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-498, gnl|bosTau2|chr10 (38876244-38875748)
               

               
               1-498, gnl|canFam2|chr30 (23886323-23886734)
               

               
               1-498, gnl|danRer3|chr11 (10499908-10499572)
               

               
               1-498, gnl|dasNov1|scaffold_30344 (3683-3269)
               

               
               1-498, gnl|echTel1|scaffold_319681 (7365-7778)
               

               
               1-498, gnl|galGal2|chr10 (8422293-8421879)
               

               
               1-498, gnl|hg17|chr15 (53625490-53625904)
               

               
               1-498, gnl|Hg17|chr15 (53626079-53625583)
               

               
               1-498, gnl|loxAfr1|scaffold_773 (96571-96159)
               

               
               1-498, gnl|mm7|chr9 (72978310-72977899)
               

               
               1-498, gnl|Mm7|chr9 (72977725-72978215)
               

               
               1-498, gnl|monDom2|scaffold_12 (33143471-33143884)
               

               
               1-498, gnl|oryCun1|scaffold_159160 (8302-8716)
               

               
               1-498, gnl|panTro1|chr16_random (15811067-15810653)
               

               
               1-498, gnl|rheMac2|chr7 (33865926-33866340)
               

               
               1-498, gnl|rn3|chr8 (77839973-77839562)
               

               
               1-498, gnl|xenTro1|scaffold_1255 (27244-26850)

	1-159, - strand, RNAz p=0.931195
	200-319, - strand, RNAz p=0.986847

	1-498, gnl\|bosTau2\|chr10 (38876244-38875748)
	1-498, gnl\|canFam2\|chr30 (23886323-23886734)
	1-498, gnl\|danRer3\|chr11 (10499908-10499572)
	1-498, gnl\|dasNov1\|scaffold_30344 (3683-3269)
	1-498, gnl\|echTel1\|scaffold_319681 (7365-7778)
	1-498, gnl\|galGal2\|chr10 (8422293-8421879)
	1-498, gnl\|hg17\|chr15 (53625490-53625904)
	1-498, gnl\|Hg17\|chr15 (53626079-53625583)
	1-498, gnl\|loxAfr1\|scaffold_773 (96571-96159)
	1-498, gnl\|mm7\|chr9 (72978310-72977899)
	1-498, gnl\|Mm7\|chr9 (72977725-72978215)
	1-498, gnl\|monDom2\|scaffold_12 (33143471-33143884)
	1-498, gnl\|oryCun1\|scaffold_159160 (8302-8716)
	1-498, gnl\|panTro1\|chr16_random (15811067-15810653)
	1-498, gnl\|rheMac2\|chr7 (33865926-33866340)
	1-498, gnl\|rn3\|chr8 (77839973-77839562)
	1-498, gnl\|xenTro1\|scaffold_1255 (27244-26850)