Non-Coding RNA Search

Pig2-87C19

Sequence:


               
               TTAATGTTTAAGTGTCACTTTAGTGAAGAGGTCAAACGCCCTGGGTATGTTGGGATAACC
CATCAGCAGTCTCCATCACTCCCTATACCCACCTTTAGCAACTTGTCTTACCAGTACTTT
TTGAGACTCTTTTCAACCAGATGGCAAGCACATTCGTAGCCGCCCTCAACTAGAAGGATA
ACCTGTCAGACATTTTCATCATGCTTTTGATATTCCCACCTGTTGGAGGAAGAAAAAAAA
GCAAGGGTCATCCAAGCCAGTGAACTTAGATTCTCATGTGGAATGATTTATATCAAGAAG
AACCTCCAGCTTATTTGGAAATCACTTGCATCAGGCGCTCTTTTACAAATGTTCTCTTCA
TCTCGAAAATAATTTGGCTCTATAATCGTGGCACTCAGGAAGTTAGGGCAGGTGGTTTGG
TGAAAGAACAGCTGAAGGCAATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAATGTTTAAGTGTCACTTTAGTGAAGAGGTCAAACGCCCTGGGTATGTTGGGATAACC
CATCAGCAGTCTCCATCACTCCCTATACCCACCTTTAGCAACTTGTCTTACCAGTACTTT
TTGAGACTCTTTTCAACCAGATGGCAAGCACATTCGTAGCCGCCCTCAACTAGAAGGATA
ACCTGTCAGACATTTTCATCATGCTTTTGATATTCCCACCTGTTGGAGGAAGAAAAAAAA
GCAAGGGTCATCCAAGCCAGTGAACTTAGATTCTCATGTGGAATGATTTATATCAAGAAG
AACCTCCAGCTTATTTGGAAATCACTTGCATCAGGCGCTCTTTTACAAATGTTCTCTTCA
TCTCGAAAATAATTTGGCTCTATAATCGTGGCACTCAGGAAGTTAGGGCAGGTGGTTTGG
TGAAAGAACAGCTGAAGGCAATACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               282-428, - strand, RNAz p=0.957995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-428, - strand, RNAz p=0.957995

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-445, gnl|bosTau2|chr23 (6581882-6582331)
               

               
               1-445, gnl|canFam2|chr14 (26622771-26624061)
               

               
               1-445, gnl|echTel1|scaffold_312605 (15584-16863)
               

               
               1-445, gnl|hg17|chr7 (7926937-7928252)
               

               
               1-445, gnl|Hg17|chr7 (7927964-7927524)
               

               
               1-445, gnl|loxAfr1|scaffold_22648 (22140-20760)
               

               
               1-445, gnl|mm7|chr6 (8589084-8590333)
               

               
               1-445, gnl|Mm7|chr6 (8589984-8589591)
               

               
               1-445, gnl|oryCun1|scaffold_210302 (123617-125068)
               

               
               1-445, gnl|panTro1|chr6 (8393125-8394436)
               

               
               1-445, gnl|rheMac2|chr3 (118253010-118251681)
               

               
               1-445, gnl|rn3|chr4 (33799712-33800925)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-445, gnl|bosTau2|chr23 (6581882-6582331)
               

               
               1-445, gnl|canFam2|chr14 (26622771-26624061)
               

               
               1-445, gnl|echTel1|scaffold_312605 (15584-16863)
               

               
               1-445, gnl|hg17|chr7 (7926937-7928252)
               

               
               1-445, gnl|Hg17|chr7 (7927964-7927524)
               

               
               1-445, gnl|loxAfr1|scaffold_22648 (22140-20760)
               

               
               1-445, gnl|mm7|chr6 (8589084-8590333)
               

               
               1-445, gnl|Mm7|chr6 (8589984-8589591)
               

               
               1-445, gnl|oryCun1|scaffold_210302 (123617-125068)
               

               
               1-445, gnl|panTro1|chr6 (8393125-8394436)
               

               
               1-445, gnl|rheMac2|chr3 (118253010-118251681)
               

               
               1-445, gnl|rn3|chr4 (33799712-33800925)

	1-445, gnl\|bosTau2\|chr23 (6581882-6582331)
	1-445, gnl\|canFam2\|chr14 (26622771-26624061)
	1-445, gnl\|echTel1\|scaffold_312605 (15584-16863)
	1-445, gnl\|hg17\|chr7 (7926937-7928252)
	1-445, gnl\|Hg17\|chr7 (7927964-7927524)
	1-445, gnl\|loxAfr1\|scaffold_22648 (22140-20760)
	1-445, gnl\|mm7\|chr6 (8589084-8590333)
	1-445, gnl\|Mm7\|chr6 (8589984-8589591)
	1-445, gnl\|oryCun1\|scaffold_210302 (123617-125068)
	1-445, gnl\|panTro1\|chr6 (8393125-8394436)
	1-445, gnl\|rheMac2\|chr3 (118253010-118251681)
	1-445, gnl\|rn3\|chr4 (33799712-33800925)