Non-Coding RNA Search

Pig2-87D20

Sequence:


               
               GTTCCTCAGAGCCACTAAATACAAAGGGAGGCTGGGGCCAGGGAGGGAGAAGCCCTCAAC
ATCCTAATGTATAGAGAGGGAGAATCATCCTGCTCATGGTGTTAACTTGGTCTTCGGTGG
TTTCAAGTGTATCTCCAGGGCCACTTTGGGATGCAGACCTTTTGGGTCAAAGCAAGTCCT
TTCAAGCCTGCATCTCAATGCTCTGCCAAACTGCATGGGTGTCTTTGGTGCTCTTAGGCC
CAAGGAGACACAGAGCTCTTCAAGTCCTAGAGACTGACTTTTTAGCTTGCTGGTAGTTGA
GTAATTTTCCAGAAATGGGACTTGGCCCGTTGCCCTGTGTAAGGTACCTGCCCATCCCTC
TTACATAAGAAAGTATTGTTTGTTCTCACTGAGGATTTAGGAGGCCAGCTCCTCAATGAG
GCTGAGCTCAGGAAATCCTGAAGCTGCAGCCCCAGCCATCAAGGGTCTTTGACCCAGTCT
AGTGGGAACTAAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCTCAGAGCCACTAAATACAAAGGGAGGCTGGGGCCAGGGAGGGAGAAGCCCTCAAC
ATCCTAATGTATAGAGAGGGAGAATCATCCTGCTCATGGTGTTAACTTGGTCTTCGGTGG
TTTCAAGTGTATCTCCAGGGCCACTTTGGGATGCAGACCTTTTGGGTCAAAGCAAGTCCT
TTCAAGCCTGCATCTCAATGCTCTGCCAAACTGCATGGGTGTCTTTGGTGCTCTTAGGCC
CAAGGAGACACAGAGCTCTTCAAGTCCTAGAGACTGACTTTTTAGCTTGCTGGTAGTTGA
GTAATTTTCCAGAAATGGGACTTGGCCCGTTGCCCTGTGTAAGGTACCTGCCCATCCCTC
TTACATAAGAAAGTATTGTTTGTTCTCACTGAGGATTTAGGAGGCCAGCTCCTCAATGAG
GCTGAGCTCAGGAAATCCTGAAGCTGCAGCCCCAGCCATCAAGGGTCTTTGACCCAGTCT
AGTGGGAACTAAGGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               374-492, - strand, RNAz p=0.97362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-492, - strand, RNAz p=0.97362

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-182, gnl|bosTau2|chr7 (25999832-26000016)
               

               
               1-182, gnl|canFam2|chr4 (40115942-40115800)
               

               
               1-182, gnl|hg17|chr5 (175766691-175766922)
               

               
               1-182, gnl|Hg17|chr5 (175766725-175767297)
               

               
               1-182, gnl|loxAfr1|scaffold_62990 (7333-7545)
               

               
               1-182, gnl|oryCun1|scaffold_209881 (67911-67708)
               

               
               1-182, gnl|panTro1|chr4 (183218457-183218692)
               

               
               1-182, gnl|rheMac2|chr6 (172879749-172879989)
               

               
               1-182, gnl|rn3|chr17 (16069617-16069411)
               


               
               236-492, gnl|bosTau2|chr7 (26000105-26000350)
               

               
               236-492, gnl|Hg17|chr5 (175767388-175767644)
               

               
               236-492, gnl|Mm7|chr13 (53689847-53690103)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr7 (25999832-26000016)
               

               
               1-182, gnl|canFam2|chr4 (40115942-40115800)
               

               
               1-182, gnl|hg17|chr5 (175766691-175766922)
               

               
               1-182, gnl|Hg17|chr5 (175766725-175767297)
               

               
               1-182, gnl|loxAfr1|scaffold_62990 (7333-7545)
               

               
               1-182, gnl|oryCun1|scaffold_209881 (67911-67708)
               

               
               1-182, gnl|panTro1|chr4 (183218457-183218692)
               

               
               1-182, gnl|rheMac2|chr6 (172879749-172879989)
               

               
               1-182, gnl|rn3|chr17 (16069617-16069411)
               


               
               236-492, gnl|bosTau2|chr7 (26000105-26000350)
               

               
               236-492, gnl|Hg17|chr5 (175767388-175767644)
               

               
               236-492, gnl|Mm7|chr13 (53689847-53690103)

	1-182, gnl\|bosTau2\|chr7 (25999832-26000016)
	1-182, gnl\|canFam2\|chr4 (40115942-40115800)
	1-182, gnl\|hg17\|chr5 (175766691-175766922)
	1-182, gnl\|Hg17\|chr5 (175766725-175767297)
	1-182, gnl\|loxAfr1\|scaffold_62990 (7333-7545)
	1-182, gnl\|oryCun1\|scaffold_209881 (67911-67708)
	1-182, gnl\|panTro1\|chr4 (183218457-183218692)
	1-182, gnl\|rheMac2\|chr6 (172879749-172879989)
	1-182, gnl\|rn3\|chr17 (16069617-16069411)

	236-492, gnl\|bosTau2\|chr7 (26000105-26000350)
	236-492, gnl\|Hg17\|chr5 (175767388-175767644)
	236-492, gnl\|Mm7\|chr13 (53689847-53690103)