Non-Coding RNA Search

Pig2-87K07

Sequence:


               
               CTGCTTTCAGTTGCAAGGATTTCTGTAAGTCCAACAGGCAGCCAGCGAAGCTGAACCTTC
TCACCTGTCAGGTGAAACCGAACGCCGAGGACAAGAAGTCTTTTGACCTGATATCACATA
ATAGGACGTATCACTTTCAGGCGGAAGATGAGCAGGACTACGTGGCGTGGATCTCCGTGC
TGACGAACAGCAAAGAGGAGGCCCTGACCATGGCCTTCCGTGGAGAGCAGAGCACCGGGG
AGAACAGCCTGGAAGACCTGACGAAAGCCATCATCGAGGACGTCCAGCGGCTCCCGGGGA
ACGAGGTCTGCTGCGACTGTGGCTCGTCAGAACCCACCTGGCTTTCAACCAACTTGGGTA
TTCTGACGTGTATAGAATGTTCCGGCATCCATAGGGAAATGGGGGTTCATATTTCTCGCA
TTCAGTCTTTGGAACTAGACAAATTAGGAACTTCTGAACTCTTGCTGGCCAAGAATGTAG
GAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTTTCAGTTGCAAGGATTTCTGTAAGTCCAACAGGCAGCCAGCGAAGCTGAACCTTC
TCACCTGTCAGGTGAAACCGAACGCCGAGGACAAGAAGTCTTTTGACCTGATATCACATA
ATAGGACGTATCACTTTCAGGCGGAAGATGAGCAGGACTACGTGGCGTGGATCTCCGTGC
TGACGAACAGCAAAGAGGAGGCCCTGACCATGGCCTTCCGTGGAGAGCAGAGCACCGGGG
AGAACAGCCTGGAAGACCTGACGAAAGCCATCATCGAGGACGTCCAGCGGCTCCCGGGGA
ACGAGGTCTGCTGCGACTGTGGCTCGTCAGAACCCACCTGGCTTTCAACCAACTTGGGTA
TTCTGACGTGTATAGAATGTTCCGGCATCCATAGGGAAATGGGGGTTCATATTTCTCGCA
TTCAGTCTTTGGAACTAGACAAATTAGGAACTTCTGAACTCTTGCTGGCCAAGAATGTAG
GAAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               167-285, - strand, RNAz p=0.703892

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-285, - strand, RNAz p=0.703892

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               167-330, gnl|bosTau2|chr14 (6074160-6074323)
               

               
               167-330, gnl|canFam2|chr13 (30199302-30199473)
               

               
               167-330, gnl|danRer3|chr2 (26977390-26977558)
               

               
               167-330, gnl|dasNov1|scaffold_29764 (52476-52646)
               

               
               167-330, gnl|echTel1|scaffold_290130 (1371-1204)
               

               
               167-330, gnl|fr1|chrUn (3360188-3360359)
               

               
               167-330, gnl|galGal2|chr2 (143190236-143190069)
               

               
               167-330, gnl|hg17|chr8 (131209354-131209525)
               

               
               167-330, gnl|Hg17|chr8 (131209518-131209355)
               

               
               167-330, gnl|loxAfr1|scaffold_1926 (116102-116297)
               

               
               167-330, gnl|mm7|chr15 (64205891-64206061)
               

               
               167-330, gnl|Mm7|chr15 (64206055-64205892)
               

               
               167-330, gnl|monDom2|scaffold_3 (21821018-21820847)
               

               
               167-330, gnl|oryCun1|scaffold_201242 (127678-127848)
               

               
               167-330, gnl|panTro1|chr7 (133907074-133907245)
               

               
               167-330, gnl|rheMac2|chr8 (132695932-132696103)
               

               
               167-330, gnl|rn3|chr7 (101380170-101380340)
               

               
               167-330, gnl|tetNig1|chr6 (4814085-4814247)
               

               
               167-330, gnl|xenTro1|scaffold_488 (240829-240659)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-330, gnl|bosTau2|chr14 (6074160-6074323)
               

               
               167-330, gnl|canFam2|chr13 (30199302-30199473)
               

               
               167-330, gnl|danRer3|chr2 (26977390-26977558)
               

               
               167-330, gnl|dasNov1|scaffold_29764 (52476-52646)
               

               
               167-330, gnl|echTel1|scaffold_290130 (1371-1204)
               

               
               167-330, gnl|fr1|chrUn (3360188-3360359)
               

               
               167-330, gnl|galGal2|chr2 (143190236-143190069)
               

               
               167-330, gnl|hg17|chr8 (131209354-131209525)
               

               
               167-330, gnl|Hg17|chr8 (131209518-131209355)
               

               
               167-330, gnl|loxAfr1|scaffold_1926 (116102-116297)
               

               
               167-330, gnl|mm7|chr15 (64205891-64206061)
               

               
               167-330, gnl|Mm7|chr15 (64206055-64205892)
               

               
               167-330, gnl|monDom2|scaffold_3 (21821018-21820847)
               

               
               167-330, gnl|oryCun1|scaffold_201242 (127678-127848)
               

               
               167-330, gnl|panTro1|chr7 (133907074-133907245)
               

               
               167-330, gnl|rheMac2|chr8 (132695932-132696103)
               

               
               167-330, gnl|rn3|chr7 (101380170-101380340)
               

               
               167-330, gnl|tetNig1|chr6 (4814085-4814247)
               

               
               167-330, gnl|xenTro1|scaffold_488 (240829-240659)

	167-330, gnl\|bosTau2\|chr14 (6074160-6074323)
	167-330, gnl\|canFam2\|chr13 (30199302-30199473)
	167-330, gnl\|danRer3\|chr2 (26977390-26977558)
	167-330, gnl\|dasNov1\|scaffold_29764 (52476-52646)
	167-330, gnl\|echTel1\|scaffold_290130 (1371-1204)
	167-330, gnl\|fr1\|chrUn (3360188-3360359)
	167-330, gnl\|galGal2\|chr2 (143190236-143190069)
	167-330, gnl\|hg17\|chr8 (131209354-131209525)
	167-330, gnl\|Hg17\|chr8 (131209518-131209355)
	167-330, gnl\|loxAfr1\|scaffold_1926 (116102-116297)
	167-330, gnl\|mm7\|chr15 (64205891-64206061)
	167-330, gnl\|Mm7\|chr15 (64206055-64205892)
	167-330, gnl\|monDom2\|scaffold_3 (21821018-21820847)
	167-330, gnl\|oryCun1\|scaffold_201242 (127678-127848)
	167-330, gnl\|panTro1\|chr7 (133907074-133907245)
	167-330, gnl\|rheMac2\|chr8 (132695932-132696103)
	167-330, gnl\|rn3\|chr7 (101380170-101380340)
	167-330, gnl\|tetNig1\|chr6 (4814085-4814247)
	167-330, gnl\|xenTro1\|scaffold_488 (240829-240659)