Non-Coding RNA Search

Pig2-87M04

Sequence:


               
               GCTGTGCGGACCGTGTTGGCTGAGCTGCCTGCCCTGGTCAGCGAGAGCGACATGCATGTG
GCCCAGCTGGCTGTGGACTTCCTCGCCACTGTGACCCATGCCCAGCCAGCCTCATTGGCC
GAGGTCAGTGGTCCTGTGCTCTCTGAGTTGCTGCGGTTGCTACGCTCACCCCTGCTGCCG
GCTGGTGTGCTGGCAGCCGCCGAAGGCTTCCTGCAGGCTCTGGTAGGGACGCGGCCACCG
TGCGTGAACTACGCAGAACTCATCAGCCTGCTCACTGCACCTGTTTACAACCAACCTGTG
GACAGCGGGCCTGGCCTGCACAAGCAGGTGTTCCACTCGCTGGCACGGTGTGTGGCAGCC
CTTGCAGCAGCCTGTCCCCAGGAGGCAGCAGGCACAGCCAAGCGCCTGGTCTGTGATGCC
AGGTCACCCAGCTCCAGCACGGGGGTCAAGGTCCTGGCGTTCCTGTCGCTGGCTGAGGTG
GGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTGCGGACCGTGTTGGCTGAGCTGCCTGCCCTGGTCAGCGAGAGCGACATGCATGTG
GCCCAGCTGGCTGTGGACTTCCTCGCCACTGTGACCCATGCCCAGCCAGCCTCATTGGCC
GAGGTCAGTGGTCCTGTGCTCTCTGAGTTGCTGCGGTTGCTACGCTCACCCCTGCTGCCG
GCTGGTGTGCTGGCAGCCGCCGAAGGCTTCCTGCAGGCTCTGGTAGGGACGCGGCCACCG
TGCGTGAACTACGCAGAACTCATCAGCCTGCTCACTGCACCTGTTTACAACCAACCTGTG
GACAGCGGGCCTGGCCTGCACAAGCAGGTGTTCCACTCGCTGGCACGGTGTGTGGCAGCC
CTTGCAGCAGCCTGTCCCCAGGAGGCAGCAGGCACAGCCAAGCGCCTGGTCTGTGATGCC
AGGTCACCCAGCTCCAGCACGGGGGTCAAGGTCCTGGCGTTCCTGTCGCTGGCTGAGGTG
GGCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               263-363, - strand, RNAz p=0.769434
               

               
               360-479, - strand, RNAz p=0.55757

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-363, - strand, RNAz p=0.769434
               

               
               360-479, - strand, RNAz p=0.55757

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-484, gnl|bosTau2|chr8 (40739741-40740224)
               

               
               1-484, gnl|canFam2|chr20 (8775683-8775358)
               

               
               1-484, gnl|danRer3|chr22 (42912644-42912339)
               

               
               1-484, gnl|dasNov1|scaffold_36018 (972-647)
               

               
               1-484, gnl|echTel1|scaffold_183182 (4176-4501)
               

               
               1-484, gnl|fr1|chrUn (168915704-168916118)
               

               
               1-484, gnl|galGal2|chr12 (19388080-19388405)
               

               
               1-484, gnl|hg17|chr3 (12833490-12833815)
               

               
               1-484, gnl|Hg17|chr3 (12833502-12833985)
               

               
               1-484, gnl|loxAfr1|scaffold_128587 (62-387)
               

               
               1-484, gnl|mm7|chr6 (115817959-115818284)
               

               
               1-484, gnl|Mm7|chr6 (115817971-115818454)
               

               
               1-484, gnl|monDom2|scaffold_5 (40387609-40387921)
               

               
               1-484, gnl|oryCun1|scaffold_192862 (8329-8646)
               

               
               1-484, gnl|panTro1|chr2 (13287806-13288131)
               

               
               1-484, gnl|rheMac2|chr2 (48229104-48228779)
               

               
               1-484, gnl|rn3|chr4 (152173493-152173818)
               

               
               1-484, gnl|tetNig1|chrUn_random (19233243-19233632)
               

               
               1-484, gnl|xenTro1|scaffold_172 (1544444-1544757)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-484, gnl|bosTau2|chr8 (40739741-40740224)
               

               
               1-484, gnl|canFam2|chr20 (8775683-8775358)
               

               
               1-484, gnl|danRer3|chr22 (42912644-42912339)
               

               
               1-484, gnl|dasNov1|scaffold_36018 (972-647)
               

               
               1-484, gnl|echTel1|scaffold_183182 (4176-4501)
               

               
               1-484, gnl|fr1|chrUn (168915704-168916118)
               

               
               1-484, gnl|galGal2|chr12 (19388080-19388405)
               

               
               1-484, gnl|hg17|chr3 (12833490-12833815)
               

               
               1-484, gnl|Hg17|chr3 (12833502-12833985)
               

               
               1-484, gnl|loxAfr1|scaffold_128587 (62-387)
               

               
               1-484, gnl|mm7|chr6 (115817959-115818284)
               

               
               1-484, gnl|Mm7|chr6 (115817971-115818454)
               

               
               1-484, gnl|monDom2|scaffold_5 (40387609-40387921)
               

               
               1-484, gnl|oryCun1|scaffold_192862 (8329-8646)
               

               
               1-484, gnl|panTro1|chr2 (13287806-13288131)
               

               
               1-484, gnl|rheMac2|chr2 (48229104-48228779)
               

               
               1-484, gnl|rn3|chr4 (152173493-152173818)
               

               
               1-484, gnl|tetNig1|chrUn_random (19233243-19233632)
               

               
               1-484, gnl|xenTro1|scaffold_172 (1544444-1544757)

	263-363, - strand, RNAz p=0.769434
	360-479, - strand, RNAz p=0.55757

	1-484, gnl\|bosTau2\|chr8 (40739741-40740224)
	1-484, gnl\|canFam2\|chr20 (8775683-8775358)
	1-484, gnl\|danRer3\|chr22 (42912644-42912339)
	1-484, gnl\|dasNov1\|scaffold_36018 (972-647)
	1-484, gnl\|echTel1\|scaffold_183182 (4176-4501)
	1-484, gnl\|fr1\|chrUn (168915704-168916118)
	1-484, gnl\|galGal2\|chr12 (19388080-19388405)
	1-484, gnl\|hg17\|chr3 (12833490-12833815)
	1-484, gnl\|Hg17\|chr3 (12833502-12833985)
	1-484, gnl\|loxAfr1\|scaffold_128587 (62-387)
	1-484, gnl\|mm7\|chr6 (115817959-115818284)
	1-484, gnl\|Mm7\|chr6 (115817971-115818454)
	1-484, gnl\|monDom2\|scaffold_5 (40387609-40387921)
	1-484, gnl\|oryCun1\|scaffold_192862 (8329-8646)
	1-484, gnl\|panTro1\|chr2 (13287806-13288131)
	1-484, gnl\|rheMac2\|chr2 (48229104-48228779)
	1-484, gnl\|rn3\|chr4 (152173493-152173818)
	1-484, gnl\|tetNig1\|chrUn_random (19233243-19233632)
	1-484, gnl\|xenTro1\|scaffold_172 (1544444-1544757)