Non-Coding RNA Search

Pig2-87N20

Sequence:


               
               AAATCAGCTATACTTTAAGAAAAGAAAGACTAGAAATGTTTCTTGTGAAAGTGGCAATTT
GACTGTTATCTGAAGGAGAACCGAAATGTGAATAGGGTTTTGTTGAAGCTGTTTCTTTGT
AGATGCACCGATCAGCTTTCCCAGAGGCCATTTCTATTTTACCCGGTAAATcagaggttc
tcaaatttgaatgtgcacctgaatcatacagaaggcttgttcatcactgacgtctgggcc
ttactctcaaagcttctgattctgtaggtctgggtgggacctgaacaggagcatgttgaa
caagttcccaggtaatggtgatgctgctgatctgggggccaccctttgaaaaccaTGCCT
CTAAATCAACACCCATACCACTTCTTGGCAAGTCACAGAACGAAACACGAGCAACATCTA
ACAAATGTTTCCCAGGTTGCTCACCACAAAAATCAATTTCCAAAGTCTTTGGGTTGAAAT
GTTTTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCAGCTATACTTTAAGAAAAGAAAGACTAGAAATGTTTCTTGTGAAAGTGGCAATTT
GACTGTTATCTGAAGGAGAACCGAAATGTGAATAGGGTTTTGTTGAAGCTGTTTCTTTGT
AGATGCACCGATCAGCTTTCCCAGAGGCCATTTCTATTTTACCCGGTAAATcagaggttc
tcaaatttgaatgtgcacctgaatcatacagaaggcttgttcatcactgacgtctgggcc
ttactctcaaagcttctgattctgtaggtctgggtgggacctgaacaggagcatgttgaa
caagttcccaggtaatggtgatgctgctgatctgggggccaccctttgaaaaccaTGCCT
CTAAATCAACACCCATACCACTTCTTGGCAAGTCACAGAACGAAACACGAGCAACATCTA
ACAAATGTTTCCCAGGTTGCTCACCACAAAAATCAATTTCCAAAGTCTTTGGGTTGAAAT
GTTTTTACA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               344-489, + strand, RNAz p=0.78986
               

               
               359-489, - strand, RNAz p=0.789512

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               344-489, + strand, RNAz p=0.78986
               

               
               359-489, - strand, RNAz p=0.789512

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               34-489, gnl|bosTau2|chr29 (17047835-17047386)
               

               
               34-489, gnl|canFam2|chr21 (45736254-45736802)
               

               
               34-489, gnl|hg17|chr11 (20508762-20509361)
               

               
               34-489, gnl|Hg17|chr11 (20508979-20509444)
               

               
               34-489, gnl|oryCun1|scaffold_202934 (201794-201234)
               

               
               34-489, gnl|panTro1|chr9 (20752891-20753491)
               

               
               34-489, gnl|rheMac2|chr14 (51345275-51344673)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-489, gnl|bosTau2|chr29 (17047835-17047386)
               

               
               34-489, gnl|canFam2|chr21 (45736254-45736802)
               

               
               34-489, gnl|hg17|chr11 (20508762-20509361)
               

               
               34-489, gnl|Hg17|chr11 (20508979-20509444)
               

               
               34-489, gnl|oryCun1|scaffold_202934 (201794-201234)
               

               
               34-489, gnl|panTro1|chr9 (20752891-20753491)
               

               
               34-489, gnl|rheMac2|chr14 (51345275-51344673)

	344-489, + strand, RNAz p=0.78986
	359-489, - strand, RNAz p=0.789512

	34-489, gnl\|bosTau2\|chr29 (17047835-17047386)
	34-489, gnl\|canFam2\|chr21 (45736254-45736802)
	34-489, gnl\|hg17\|chr11 (20508762-20509361)
	34-489, gnl\|Hg17\|chr11 (20508979-20509444)
	34-489, gnl\|oryCun1\|scaffold_202934 (201794-201234)
	34-489, gnl\|panTro1\|chr9 (20752891-20753491)
	34-489, gnl\|rheMac2\|chr14 (51345275-51344673)