Non-Coding RNA Search

Pig2-88N03

Sequence:


               
               TTAAAAAAAAAAAAAAAAGCGGGGGGGCTCAGTTTTAAAAAATTCCTGTTTTTTGCACAC
ATTTGCATTTCAAGCTAAGTCCTGATTCCAAATATGATTACGTTCAAACTCAACCTTGGG
GACATTAAAAATATAGATGTTTTTTGTATCCGGATCCACATGGTAATTGGATTCCCATTC
GGGGTTCAAATACCACCCCCAAACCCCCATTTTTCCCATAGCCCCCCTTTCCCTTGGCCC
CCCGGGTGGGGGGGGGGTTAAATGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAAAAAAAAAAAAAGCGGGGGGGCTCAGTTTTAAAAAATTCCTGTTTTTTGCACAC
ATTTGCATTTCAAGCTAAGTCCTGATTCCAAATATGATTACGTTCAAACTCAACCTTGGG
GACATTAAAAATATAGATGTTTTTTGTATCCGGATCCACATGGTAATTGGATTCCCATTC
GGGGTTCAAATACCACCCCCAAACCCCCATTTTTCCCATAGCCCCCCTTTCCCTTGGCCC
CCCGGGTGGGGGGGGGGTTAAATGGCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               87-233, - strand, RNAz p=0.658876
               

               
               140-233, - strand, RNAz p=0.782012

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-233, - strand, RNAz p=0.658876
               

               
               140-233, - strand, RNAz p=0.782012

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               33-233, gnl|bosTau2|chr3 (25963453-25963247)
               

               
               33-233, gnl|canFam2|chr6 (45420672-45420171)
               

               
               33-233, gnl|dasNov1|scaffold_61047 (5106-4611)
               

               
               33-233, gnl|echTel1|scaffold_277841 (10149-10596)
               

               
               33-233, gnl|hg17|chr1 (109753246-109753791)
               

               
               33-233, gnl|Hg17|chr1 (109753555-109753790)
               

               
               33-233, gnl|loxAfr1|scaffold_164010 (3732-4208)
               

               
               33-233, gnl|mm7|chr3 (108015420-108014944)
               

               
               33-233, gnl|monDom2|scaffold_0 (7150199-7149776)
               

               
               33-233, gnl|oryCun1|scaffold_208853 (35460-36013)
               

               
               33-233, gnl|panTro1|chr1 (108683502-108684048)
               

               
               33-233, gnl|rheMac2|chr1 (112557727-112558268)
               

               
               33-233, gnl|rn3|chr2 (203725126-203724684)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-233, gnl|bosTau2|chr3 (25963453-25963247)
               

               
               33-233, gnl|canFam2|chr6 (45420672-45420171)
               

               
               33-233, gnl|dasNov1|scaffold_61047 (5106-4611)
               

               
               33-233, gnl|echTel1|scaffold_277841 (10149-10596)
               

               
               33-233, gnl|hg17|chr1 (109753246-109753791)
               

               
               33-233, gnl|Hg17|chr1 (109753555-109753790)
               

               
               33-233, gnl|loxAfr1|scaffold_164010 (3732-4208)
               

               
               33-233, gnl|mm7|chr3 (108015420-108014944)
               

               
               33-233, gnl|monDom2|scaffold_0 (7150199-7149776)
               

               
               33-233, gnl|oryCun1|scaffold_208853 (35460-36013)
               

               
               33-233, gnl|panTro1|chr1 (108683502-108684048)
               

               
               33-233, gnl|rheMac2|chr1 (112557727-112558268)
               

               
               33-233, gnl|rn3|chr2 (203725126-203724684)

	87-233, - strand, RNAz p=0.658876
	140-233, - strand, RNAz p=0.782012

	33-233, gnl\|bosTau2\|chr3 (25963453-25963247)
	33-233, gnl\|canFam2\|chr6 (45420672-45420171)
	33-233, gnl\|dasNov1\|scaffold_61047 (5106-4611)
	33-233, gnl\|echTel1\|scaffold_277841 (10149-10596)
	33-233, gnl\|hg17\|chr1 (109753246-109753791)
	33-233, gnl\|Hg17\|chr1 (109753555-109753790)
	33-233, gnl\|loxAfr1\|scaffold_164010 (3732-4208)
	33-233, gnl\|mm7\|chr3 (108015420-108014944)
	33-233, gnl\|monDom2\|scaffold_0 (7150199-7149776)
	33-233, gnl\|oryCun1\|scaffold_208853 (35460-36013)
	33-233, gnl\|panTro1\|chr1 (108683502-108684048)
	33-233, gnl\|rheMac2\|chr1 (112557727-112558268)
	33-233, gnl\|rn3\|chr2 (203725126-203724684)