Non-Coding RNA Search

Pig2-88N18

Sequence:


               
               GGAAAAACACCCTGTTTATGGGCACTACCCCCTCCTACTACCAGCTGTCCAATTTGCTGG
CAGATGCCCGCCTGGTATTTCCAGTGACTACTGACCCTCTGGTGCCAGCAGGCCCCGTCA
GTTCCTCTTCCACGGCTACCTCAGTCACTGCCAGCAACCCCTCCTTCATGCTCAACCCCT
CTGTACCAGGGATACTACCCAGCTACTCACTCCCATTCTCACAGCCACTCCTGTCCGAGC
CGAGGATGTTTGCGCCTTTTCCTTCCCCTGTCTTGTCCAGCAACCTTTCACGGGGCATGT
CTGTCTACCCAGGCTACATGTCCCCACATGCAGGCTACCCAGCTGGCGGCCTTCTCCGGT
CCCAGGTGCCTCCTTTTGACTCTCATGAGGTTGCTGAGGTGGGGTTTANCTCCAACGAAG
ATGAGGATAAGGACGATGATGTGATAGAGGTCACTGGGAAATAGCTGGGGAGCCCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAACACCCTGTTTATGGGCACTACCCCCTCCTACTACCAGCTGTCCAATTTGCTGG
CAGATGCCCGCCTGGTATTTCCAGTGACTACTGACCCTCTGGTGCCAGCAGGCCCCGTCA
GTTCCTCTTCCACGGCTACCTCAGTCACTGCCAGCAACCCCTCCTTCATGCTCAACCCCT
CTGTACCAGGGATACTACCCAGCTACTCACTCCCATTCTCACAGCCACTCCTGTCCGAGC
CGAGGATGTTTGCGCCTTTTCCTTCCCCTGTCTTGTCCAGCAACCTTTCACGGGGCATGT
CTGTCTACCCAGGCTACATGTCCCCACATGCAGGCTACCCAGCTGGCGGCCTTCTCCGGT
CCCAGGTGCCTCCTTTTGACTCTCATGAGGTTGCTGAGGTGGGGTTTANCTCCAACGAAG
ATGAGGATAAGGACGATGATGTGATAGAGGTCACTGGGAAATAGCTGGGGAGCCCCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6841300|gb|AAF29003.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6841300|gb|AAF29003.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-199, - strand, RNAz p=0.924371
               

               
               280-479, + strand, RNAz p=0.89997

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.924371
               

               
               280-479, + strand, RNAz p=0.89997

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015106, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015106, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-479, gnl|bosTau2|chr22 (37588128-37588606)
               

               
               1-479, gnl|Hg17|chr3 (51672013-51672491)
               

               
               1-479, gnl|Mm7|chr9 (106422627-106422150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr22 (37588128-37588606)
               

               
               1-479, gnl|Hg17|chr3 (51672013-51672491)
               

               
               1-479, gnl|Mm7|chr9 (106422627-106422150)

	1-199, - strand, RNAz p=0.924371
	280-479, + strand, RNAz p=0.89997

	1-479, gnl\|bosTau2\|chr22 (37588128-37588606)
	1-479, gnl\|Hg17\|chr3 (51672013-51672491)
	1-479, gnl\|Mm7\|chr9 (106422627-106422150)