Non-Coding RNA Search

Pig2-89J18

Sequence:


               
               AGCCTGGGGCCCAGGCCTGGGCCACCATGGCACTGCCTGCATGGCCAGCTACCCTCCCGC
ACACACTTCTGCTCCTGCCGGCCCTTCTGAGCTCAGGCTGGGGGGAGCTGGCGCCACAAA
TTGATGGTCAGACCTGGGCAGAGCGGGCACTTCGAGAGAATGAACGCCATGCGTTCACCT
GCCGGGTGGCAGGGGGACTTGGCACCCCTCGATTGGCCTGGTACCTGGATGGACAGCTGC
AGGAGGCCAGCACCTCAAGACTGCTGAGTGTGGGCAGGGAGGCCTTCTCTGGCGGCACCA
GCACTTTCACTGTCACTGCCCAGCGGGCCCAGCATGAACTCAACTGCTCCCTGCAGGACC
CAGGCAGTGGCCAGTCAGCCAATGCATCCGTCATCCTCAATGTGCAATTTAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTGGGGCCCAGGCCTGGGCCACCATGGCACTGCCTGCATGGCCAGCTACCCTCCCGC
ACACACTTCTGCTCCTGCCGGCCCTTCTGAGCTCAGGCTGGGGGGAGCTGGCGCCACAAA
TTGATGGTCAGACCTGGGCAGAGCGGGCACTTCGAGAGAATGAACGCCATGCGTTCACCT
GCCGGGTGGCAGGGGGACTTGGCACCCCTCGATTGGCCTGGTACCTGGATGGACAGCTGC
AGGAGGCCAGCACCTCAAGACTGCTGAGTGTGGGCAGGGAGGCCTTCTCTGGCGGCACCA
GCACTTTCACTGTCACTGCCCAGCGGGCCCAGCATGAACTCAACTGCTCCCTGCAGGACC
CAGGCAGTGGCCAGTCAGCCAATGCATCCGTCATCCTCAATGTGCAATTTAAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               294-413, - strand, RNAz p=0.863765

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               294-413, - strand, RNAz p=0.863765

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               290-408, - strand, RNAmicro p=0.998987

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               290-408, - strand, RNAmicro p=0.998987

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               95-413, gnl|bosTau2|chr15 (15012293-15011975)
               

               
               95-413, gnl|Hg17|chr11 (117908073-117908391)
               

               
               95-413, gnl|Mm7|chr9 (44732779-44732461)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-413, gnl|bosTau2|chr15 (15012293-15011975)
               

               
               95-413, gnl|Hg17|chr11 (117908073-117908391)
               

               
               95-413, gnl|Mm7|chr9 (44732779-44732461)

	95-413, gnl\|bosTau2\|chr15 (15012293-15011975)
	95-413, gnl\|Hg17\|chr11 (117908073-117908391)
	95-413, gnl\|Mm7\|chr9 (44732779-44732461)