Non-Coding RNA Search

Pig2-8N20

Sequence:


               
               GCCCACGCGTCCGCGGACGCGTGGGTTTGTGTAATTGGGCTGTGTGCTTTTCTTTTCGAA
AAAAAGTTTTTGGTTAGGGGTTTGGTTTCTGTGTTTTTGTTTTTTCTTTCCTCTCTCAGA
AAAAGAAATTTCATGCTTTAAATAAAATCCAAAGACACACCCTTTCACTGCTGATGCAGA
AAAAAAGGGAAAGGGTTCTTGTTACTTGAGAATTTGTTTCTGATTTAAACAAGACTTAGT
TTAATAAAAGAAAGAGTAAAACAAAAGATTCCCAGGTTGTTATGTGCTTCTTCTGCAAGC
AGAGAGGCAACTGTTAATGACAATTCCATATACCAAAAGATACATTTTTTACTTCAAAGT
TTTGTCCTTGTGTTAGGCAGTCTGAGCGGCGAGTGATCCATAGCGCATCCAACAAAGAAG
CAGATAGCAATGTACGTAGAAAGCAAAAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACGCGTCCGCGGACGCGTGGGTTTGTGTAATTGGGCTGTGTGCTTTTCTTTTCGAA
AAAAAGTTTTTGGTTAGGGGTTTGGTTTCTGTGTTTTTGTTTTTTCTTTCCTCTCTCAGA
AAAAGAAATTTCATGCTTTAAATAAAATCCAAAGACACACCCTTTCACTGCTGATGCAGA
AAAAAAGGGAAAGGGTTCTTGTTACTTGAGAATTTGTTTCTGATTTAAACAAGACTTAGT
TTAATAAAAGAAAGAGTAAAACAAAAGATTCCCAGGTTGTTATGTGCTTCTTCTGCAAGC
AGAGAGGCAACTGTTAATGACAATTCCATATACCAAAAGATACATTTTTTACTTCAAAGT
TTTGTCCTTGTGTTAGGCAGTCTGAGCGGCGAGTGATCCATAGCGCATCCAACAAAGAAG
CAGATAGCAATGTACGTAGAAAGCAAAAAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               101-266, - strand, RNAz p=0.99

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-266, - strand, RNAz p=0.99

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               101-266, tg80h03.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AI417673.1|), blast E-value=0, identity=92.35% 
               

               
               102-266, BP250017B10E6 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF039210.1|), blast E-value=0, identity=92.9% 
               

               
               102-266, BP250017B10H12 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF039249.1|), blast E-value=0, identity=92.9% 
               

               
               102-266, 602492 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB426948.1|), 
blast E-value=0, identity=92.9% 
               

               
               101-266, AGENCOURT_13647877 NIH_MGC_186 Homo sapiens cDNA clone 
(gb|CD000604.1|), blast E-value=0, identity=92.35% 
               

               
               101-266, AGENCOURT_14095857 NIH_MGC_181 Homo sapiens cDNA clone 
(gb|CD245175.1|), blast E-value=0, identity=92.35%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               101-266, tg80h03.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AI417673.1|), blast E-value=0, identity=92.35% 
               

               
               102-266, BP250017B10E6 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF039210.1|), blast E-value=0, identity=92.9% 
               

               
               102-266, BP250017B10H12 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF039249.1|), blast E-value=0, identity=92.9% 
               

               
               102-266, 602492 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB426948.1|), 
blast E-value=0, identity=92.9% 
               

               
               101-266, AGENCOURT_13647877 NIH_MGC_186 Homo sapiens cDNA clone 
(gb|CD000604.1|), blast E-value=0, identity=92.35% 
               

               
               101-266, AGENCOURT_14095857 NIH_MGC_181 Homo sapiens cDNA clone 
(gb|CD245175.1|), blast E-value=0, identity=92.35%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-452, gnl|bosTau2|chr18 (33593042-33593477)
               

               
               24-452, gnl|Hg17|chr16 (71377142-71376710)
               

               
               24-452, gnl|Mm7|chr8 (107558700-107559189)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-452, gnl|bosTau2|chr18 (33593042-33593477)
               

               
               24-452, gnl|Hg17|chr16 (71377142-71376710)
               

               
               24-452, gnl|Mm7|chr8 (107558700-107559189)

	101-266, tg80h03.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE (gb\|AI417673.1\|), blast E-value=0, identity=92.35%
	102-266, BP250017B10E6 Soares normalized bovine placenta Bos taurus cDNA (gb\|BF039210.1\|), blast E-value=0, identity=92.9%
	102-266, BP250017B10H12 Soares normalized bovine placenta Bos taurus cDNA (gb\|BF039249.1\|), blast E-value=0, identity=92.9%
	102-266, 602492 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB426948.1\|), blast E-value=0, identity=92.9%
	101-266, AGENCOURT_13647877 NIH_MGC_186 Homo sapiens cDNA clone (gb\|CD000604.1\|), blast E-value=0, identity=92.35%
	101-266, AGENCOURT_14095857 NIH_MGC_181 Homo sapiens cDNA clone (gb\|CD245175.1\|), blast E-value=0, identity=92.35%

	24-452, gnl\|bosTau2\|chr18 (33593042-33593477)
	24-452, gnl\|Hg17\|chr16 (71377142-71376710)
	24-452, gnl\|Mm7\|chr8 (107558700-107559189)