Non-Coding RNA Search

Pig2-8P19

Sequence:


               
               GGACCCACGCGTCCGGGGAGCAACAGGAGATGAAGCTGGAAAGGCCAAGGCCTTTGGGCC
AGACAGGGATGAAGCAGACTGGTAGGCCTGAGCGTGTTTGGGGAGGTGGCCCTTCCCTGG
TACCCGTCTGTCCCTGGGTCTCTCCAGACCAGGTCCAGGTGGTCCTGAGCCCGATGGCAG
GCCCGGAGACCATTCTAAGGGCCGCCACTCATGGGCTGCTGCTGGGGGCCCTGCGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCCACGCGTCCGGGGAGCAACAGGAGATGAAGCTGGAAAGGCCAAGGCCTTTGGGCC
AGACAGGGATGAAGCAGACTGGTAGGCCTGAGCGTGTTTGGGGAGGTGGCCCTTCCCTGG
TACCCGTCTGTCCCTGGGTCTCTCCAGACCAGGTCCAGGTGGTCCTGAGCCCGATGGCAG
GCCCGGAGACCATTCTAAGGGCCGCCACTCATGGGCTGCTGCTGGGGGCCCTGCGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-238, - strand, RNAz p=0.633717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, - strand, RNAz p=0.633717

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               42-238, gnl|bosTau2|chr25 (23299329-23299136)
               

               
               42-238, gnl|canFam2|chr6 (19773027-19772661)
               

               
               42-238, gnl|hg17|chr16 (31410855-31411223)
               

               
               42-238, gnl|Hg17|chr16 (31411264-31411072)
               

               
               42-238, gnl|mm7|chr7 (124370054-124370409)
               

               
               42-238, gnl|Mm7|chr7 (124370449-124370262)
               

               
               42-238, gnl|monDom2|scaffold_19 (7628879-7628563)
               

               
               42-238, gnl|panTro1|chr18 (32220889-32221258)
               

               
               42-238, gnl|rheMac2|chr20 (29587818-29588186)
               

               
               42-238, gnl|rn3|chr1 (187680255-187680607)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-238, gnl|bosTau2|chr25 (23299329-23299136)
               

               
               42-238, gnl|canFam2|chr6 (19773027-19772661)
               

               
               42-238, gnl|hg17|chr16 (31410855-31411223)
               

               
               42-238, gnl|Hg17|chr16 (31411264-31411072)
               

               
               42-238, gnl|mm7|chr7 (124370054-124370409)
               

               
               42-238, gnl|Mm7|chr7 (124370449-124370262)
               

               
               42-238, gnl|monDom2|scaffold_19 (7628879-7628563)
               

               
               42-238, gnl|panTro1|chr18 (32220889-32221258)
               

               
               42-238, gnl|rheMac2|chr20 (29587818-29588186)
               

               
               42-238, gnl|rn3|chr1 (187680255-187680607)

	42-238, gnl\|bosTau2\|chr25 (23299329-23299136)
	42-238, gnl\|canFam2\|chr6 (19773027-19772661)
	42-238, gnl\|hg17\|chr16 (31410855-31411223)
	42-238, gnl\|Hg17\|chr16 (31411264-31411072)
	42-238, gnl\|mm7\|chr7 (124370054-124370409)
	42-238, gnl\|Mm7\|chr7 (124370449-124370262)
	42-238, gnl\|monDom2\|scaffold_19 (7628879-7628563)
	42-238, gnl\|panTro1\|chr18 (32220889-32221258)
	42-238, gnl\|rheMac2\|chr20 (29587818-29588186)
	42-238, gnl\|rn3\|chr1 (187680255-187680607)