Non-Coding RNA Search

Pig2-91I02

Sequence:


               
               TCAGGGTCCCTGAACAGGCCAAGCTCGTTTCCCTGCTGGCCCTGGGCACCATTTATGAGC
TCCTCTACGTCCCGGAGTACAGAGCCACGGTGCGCTGGGCCTTCGCGGGGATCCTGCTGG
GCCTGCTCACGCAGCTCCACTACCTGTTTGAGCTGGACGCGGTGGAGGGCATCTCAAACT
ACCAGGAGGAGAGCCTGGAGGTCAAGGCCCTCAGCCCCTCCAGGACCTGCCTGGAGGCTC
TGAAAGGCCTTTTCTGGACCACTAACTACTGGGAGGTGTTCGCCTACCTCAAGCTGCTGA
GGGGATGGGAGCTCTTTGAGCACCTGGAAACCTACCCGGAGGGGGTGACCCTCTTGGCCA
GGGCCATGGCCCACTACGACTGTGAGGTCAAGGCAGTCTTGGGGCAGGCGGTCATCTCCC
T

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGGTCCCTGAACAGGCCAAGCTCGTTTCCCTGCTGGCCCTGGGCACCATTTATGAGC
TCCTCTACGTCCCGGAGTACAGAGCCACGGTGCGCTGGGCCTTCGCGGGGATCCTGCTGG
GCCTGCTCACGCAGCTCCACTACCTGTTTGAGCTGGACGCGGTGGAGGGCATCTCAAACT
ACCAGGAGGAGAGCCTGGAGGTCAAGGCCCTCAGCCCCTCCAGGACCTGCCTGGAGGCTC
TGAAAGGCCTTTTCTGGACCACTAACTACTGGGAGGTGTTCGCCTACCTCAAGCTGCTGA
GGGGATGGGAGCTCTTTGAGCACCTGGAAACCTACCCGGAGGGGGTGACCCTCTTGGCCA
GGGCCATGGCCCACTACGACTGTGAGGTCAAGGCAGTCTTGGGGCAGGCGGTCATCTCCC
T

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               106-224, - strand, RNAz p=0.556697

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-224, - strand, RNAz p=0.556697

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               33-224, gnl|bosTau2|chr14 (813408-813599)
               

               
               33-224, gnl|canFam2|chr13 (39735445-39735642)
               

               
               33-224, gnl|dasNov1|scaffold_173496 (405-260)
               

               
               33-224, gnl|hg17|chr8 (143650128-143650295)
               

               
               33-224, gnl|Hg17|chr8 (143650365-143650174)
               

               
               33-224, gnl|mm7|chr15 (74692396-74692541)
               

               
               33-224, gnl|Mm7|chr15 (74692608-74692420)
               

               
               33-224, gnl|monDom2|scaffold_152 (152745-152573)
               

               
               33-224, gnl|panTro1|chr7 (146789985-146790152)
               

               
               33-224, gnl|rn3|chr7 (112738405-112738550)
               

               
               33-224, gnl|xenTro1|scaffold_195 (63717-63888)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-224, gnl|bosTau2|chr14 (813408-813599)
               

               
               33-224, gnl|canFam2|chr13 (39735445-39735642)
               

               
               33-224, gnl|dasNov1|scaffold_173496 (405-260)
               

               
               33-224, gnl|hg17|chr8 (143650128-143650295)
               

               
               33-224, gnl|Hg17|chr8 (143650365-143650174)
               

               
               33-224, gnl|mm7|chr15 (74692396-74692541)
               

               
               33-224, gnl|Mm7|chr15 (74692608-74692420)
               

               
               33-224, gnl|monDom2|scaffold_152 (152745-152573)
               

               
               33-224, gnl|panTro1|chr7 (146789985-146790152)
               

               
               33-224, gnl|rn3|chr7 (112738405-112738550)
               

               
               33-224, gnl|xenTro1|scaffold_195 (63717-63888)

	33-224, gnl\|bosTau2\|chr14 (813408-813599)
	33-224, gnl\|canFam2\|chr13 (39735445-39735642)
	33-224, gnl\|dasNov1\|scaffold_173496 (405-260)
	33-224, gnl\|hg17\|chr8 (143650128-143650295)
	33-224, gnl\|Hg17\|chr8 (143650365-143650174)
	33-224, gnl\|mm7\|chr15 (74692396-74692541)
	33-224, gnl\|Mm7\|chr15 (74692608-74692420)
	33-224, gnl\|monDom2\|scaffold_152 (152745-152573)
	33-224, gnl\|panTro1\|chr7 (146789985-146790152)
	33-224, gnl\|rn3\|chr7 (112738405-112738550)
	33-224, gnl\|xenTro1\|scaffold_195 (63717-63888)