Non-Coding RNA Search

Pig2-92M13

Sequence:


               
               ATTCCTTCCAGATCCCTGCCAGGGAGATTGTGATTGGAAAGTCTGGTTTAGGGCTGATCA
CCAGTATCTTTTTCAAATGCAAGTCTAGGCCCACCCAGAGTTGCAAACTACTGACTACTG
ACTACTGAGGGGTTGCAAACTCCCAGCTCTGCAGAGGCCAGGCACATAACAAATGATATG
GAGAGGATGGGACAGTGTTACCGACGATGGCCGGTTAGAGAATGTTTACCCCACCCAATG
GCAGAAGAAATAGTGCCAGCCATAGGAATAGAGTCAACAGCCCACGAGATCACCATTTTG
CGCCTCTGCTACAGACAGGACACAGCCGGAGCGCCCGCACCCTCCCCGGCCGGCCGGGTG
AGGCGCCCTCACTATAGACAGTGAGCTTGCAGCTGCTGCGGTCCTTGCCCAGCTCGTTCT
CCACCAACATGCTGTACTCGCCGCTGTCCTTGAGCGTGCAGGTGGGGATGACGATAGTGC
ACACCCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCTTCCAGATCCCTGCCAGGGAGATTGTGATTGGAAAGTCTGGTTTAGGGCTGATCA
CCAGTATCTTTTTCAAATGCAAGTCTAGGCCCACCCAGAGTTGCAAACTACTGACTACTG
ACTACTGAGGGGTTGCAAACTCCCAGCTCTGCAGAGGCCAGGCACATAACAAATGATATG
GAGAGGATGGGACAGTGTTACCGACGATGGCCGGTTAGAGAATGTTTACCCCACCCAATG
GCAGAAGAAATAGTGCCAGCCATAGGAATAGAGTCAACAGCCCACGAGATCACCATTTTG
CGCCTCTGCTACAGACAGGACACAGCCGGAGCGCCCGCACCCTCCCCGGCCGGCCGGGTG
AGGCGCCCTCACTATAGACAGTGAGCTTGCAGCTGCTGCGGTCCTTGCCCAGCTCGTTCT
CCACCAACATGCTGTACTCGCCGCTGTCCTTGAGCGTGCAGGTGGGGATGACGATAGTGC
ACACCCCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               281-394, - strand, RNAz p=0.818066

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-394, - strand, RNAz p=0.818066

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-111, gnl|bosTau2|chr29 (18170184-18170072)
               

               
               1-111, gnl|Hg17|chr11 (18683598-18683707)
               

               
               1-111, gnl|Mm7|chr7 (43233269-43233367)
               


               
               133-489, gnl|bosTau2|chr29 (18169857-18169484)
               

               
               133-489, gnl|Hg17|chr11 (18683725-18684056)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-111, gnl|bosTau2|chr29 (18170184-18170072)
               

               
               1-111, gnl|Hg17|chr11 (18683598-18683707)
               

               
               1-111, gnl|Mm7|chr7 (43233269-43233367)
               


               
               133-489, gnl|bosTau2|chr29 (18169857-18169484)
               

               
               133-489, gnl|Hg17|chr11 (18683725-18684056)

	1-111, gnl\|bosTau2\|chr29 (18170184-18170072)
	1-111, gnl\|Hg17\|chr11 (18683598-18683707)
	1-111, gnl\|Mm7\|chr7 (43233269-43233367)

	133-489, gnl\|bosTau2\|chr29 (18169857-18169484)
	133-489, gnl\|Hg17\|chr11 (18683725-18684056)