Non-Coding RNA Search

Pig2-94K04

Sequence:


               
               CCACGCGTCCGGGACTTTTCTCCTAAAAGTTCCTGTAATGTTTATAAATCATATGTAGCA
CTACTATGGGAGTTCAGAGACCTCCAGGAAGGAGGATGTCAACAAGTACATTAAGAGACC
ATACAACAAGTTCAGAGGGAAATTTTGTTCAAAACTTTGATCCAAACCCCCACTCTTTCA
GAAAGACACACGGGATTTGTATCACTCATAACAAACCTCAGTTTTTAAAGATCTCATCCT
AATGACCCCACACAGTAATCTGCATGGAACTCCATTTATCTACCTTGGAAGAATGATGAG
CTGGGTTGACTCTGCTGACATTCAAACCTGTAGTTCCAGGGACTCTAGGTATTTCAAATC
TGATGCTTAGACCACTAAGCCATCCCCTCCGGCCTATATTTATTAGCAATCTGGAAGAGG
GGATGAATAGTGAGGTGATAAAATTTGTTGATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGGGACTTTTCTCCTAAAAGTTCCTGTAATGTTTATAAATCATATGTAGCA
CTACTATGGGAGTTCAGAGACCTCCAGGAAGGAGGATGTCAACAAGTACATTAAGAGACC
ATACAACAAGTTCAGAGGGAAATTTTGTTCAAAACTTTGATCCAAACCCCCACTCTTTCA
GAAAGACACACGGGATTTGTATCACTCATAACAAACCTCAGTTTTTAAAGATCTCATCCT
AATGACCCCACACAGTAATCTGCATGGAACTCCATTTATCTACCTTGGAAGAATGATGAG
CTGGGTTGACTCTGCTGACATTCAAACCTGTAGTTCCAGGGACTCTAGGTATTTCAAATC
TGATGCTTAGACCACTAAGCCATCCCCTCCGGCCTATATTTATTAGCAATCTGGAAGAGG
GGATGAATAGTGAGGTGATAAAATTTGTTGATGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               251-454, - strand, RNAz p=0.959162
               

               
               256-375, + strand, RNAz p=0.907248

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-454, - strand, RNAz p=0.959162
               

               
               256-375, + strand, RNAz p=0.907248

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               12-454, gnl|bosTau2|chr9 (20232765-20232327)
               

               
               12-454, gnl|canFam2|chr12 (70845881-70846425)
               

               
               12-454, gnl|dasNov1|scaffold_13126 (7299-6756)
               

               
               12-454, gnl|echTel1|scaffold_306451 (19440-18899)
               

               
               12-454, gnl|hg17|chr6 (111757716-111758257)
               

               
               12-454, gnl|Hg17|chr6 (111757813-111758252)
               

               
               12-454, gnl|loxAfr1|scaffold_744 (170733-170189)
               

               
               12-454, gnl|mm7|chr10 (39631570-39631029)
               

               
               12-454, gnl|Mm7|chr10 (39631471-39631032)
               

               
               12-454, gnl|monDom2|scaffold_0 (108516415-108515864)
               

               
               12-454, gnl|oryCun1|scaffold_201015 (153-672)
               

               
               12-454, gnl|panTro1|chr5 (114106065-114106608)
               

               
               12-454, gnl|rheMac2|chr4 (152609557-152609014)
               

               
               12-454, gnl|rn3|chr20 (44040536-44039994)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-454, gnl|bosTau2|chr9 (20232765-20232327)
               

               
               12-454, gnl|canFam2|chr12 (70845881-70846425)
               

               
               12-454, gnl|dasNov1|scaffold_13126 (7299-6756)
               

               
               12-454, gnl|echTel1|scaffold_306451 (19440-18899)
               

               
               12-454, gnl|hg17|chr6 (111757716-111758257)
               

               
               12-454, gnl|Hg17|chr6 (111757813-111758252)
               

               
               12-454, gnl|loxAfr1|scaffold_744 (170733-170189)
               

               
               12-454, gnl|mm7|chr10 (39631570-39631029)
               

               
               12-454, gnl|Mm7|chr10 (39631471-39631032)
               

               
               12-454, gnl|monDom2|scaffold_0 (108516415-108515864)
               

               
               12-454, gnl|oryCun1|scaffold_201015 (153-672)
               

               
               12-454, gnl|panTro1|chr5 (114106065-114106608)
               

               
               12-454, gnl|rheMac2|chr4 (152609557-152609014)
               

               
               12-454, gnl|rn3|chr20 (44040536-44039994)

	251-454, - strand, RNAz p=0.959162
	256-375, + strand, RNAz p=0.907248

	12-454, gnl\|bosTau2\|chr9 (20232765-20232327)
	12-454, gnl\|canFam2\|chr12 (70845881-70846425)
	12-454, gnl\|dasNov1\|scaffold_13126 (7299-6756)
	12-454, gnl\|echTel1\|scaffold_306451 (19440-18899)
	12-454, gnl\|hg17\|chr6 (111757716-111758257)
	12-454, gnl\|Hg17\|chr6 (111757813-111758252)
	12-454, gnl\|loxAfr1\|scaffold_744 (170733-170189)
	12-454, gnl\|mm7\|chr10 (39631570-39631029)
	12-454, gnl\|Mm7\|chr10 (39631471-39631032)
	12-454, gnl\|monDom2\|scaffold_0 (108516415-108515864)
	12-454, gnl\|oryCun1\|scaffold_201015 (153-672)
	12-454, gnl\|panTro1\|chr5 (114106065-114106608)
	12-454, gnl\|rheMac2\|chr4 (152609557-152609014)
	12-454, gnl\|rn3\|chr20 (44040536-44039994)