Non-Coding RNA Search

Pig2-96N06

Sequence:


               
               ATCTGTCAAAGTAACACCATGGCCAGGAGAGGTGGCCATGGCACCACACAGGGCAGCCTC
TTATTACTGGCCATGTCAGCTTCCTTGGCATCTTTGAGGTTGAGTCTGCTTGGATGTTGG
CAGAAACAAGGTTGTGTGGTGGTCGGTGTANCCCAACCCTGATGGAGAGGTTGCCACTTT
AGTGAACTGTTAATGACGCTGGATCTCTGTGCTGAATCCGTAGTACATCTGTGTGGGCAC
CAGGAACCGGGATCCCAGCAAGACTCACCCAGGTCTTTAAGGACCGGGATATAAATCAAA
CTGTTGCATATTATCCCAGAGACATGTGATATCAGAACCTTTGCTGATGGAGTTCCCACT
TGGCACAGTGGGTTAGGAATCTGGTGTTGTCTCTGCAGTGGCTTGGTCAAAGTTGCAGCA
AGGGTTCAGTCCCTGGCCCACCAACTTCCCTATGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGTCAAAGTAACACCATGGCCAGGAGAGGTGGCCATGGCACCACACAGGGCAGCCTC
TTATTACTGGCCATGTCAGCTTCCTTGGCATCTTTGAGGTTGAGTCTGCTTGGATGTTGG
CAGAAACAAGGTTGTGTGGTGGTCGGTGTANCCCAACCCTGATGGAGAGGTTGCCACTTT
AGTGAACTGTTAATGACGCTGGATCTCTGTGCTGAATCCGTAGTACATCTGTGTGGGCAC
CAGGAACCGGGATCCCAGCAAGACTCACCCAGGTCTTTAAGGACCGGGATATAAATCAAA
CTGTTGCATATTATCCCAGAGACATGTGATATCAGAACCTTTGCTGATGGAGTTCCCACT
TGGCACAGTGGGTTAGGAATCTGGTGTTGTCTCTGCAGTGGCTTGGTCAAAGTTGCAGCA
AGGGTTCAGTCCCTGGCCCACCAACTTCCCTATGCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-90, - strand, RNAz p=0.99783
               

               
               148-259, - strand, RNAz p=0.8652

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, - strand, RNAz p=0.99783
               

               
               148-259, - strand, RNAz p=0.8652

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-353, gnl|bosTau2|chr9 (49671089-49671441)
               

               
               1-353, gnl|canFam2|chr1 (42371596-42372321)
               

               
               1-353, gnl|galGal2|chr3 (46643909-46644653)
               

               
               1-353, gnl|hg17|chr6 (148758210-148758937)
               

               
               1-353, gnl|Hg17|chr6 (148758660-148758992)
               

               
               1-353, gnl|loxAfr1|scaffold_12048 (3575-4304)
               

               
               1-353, gnl|mm7|chr10 (8546521-8545783)
               

               
               1-353, gnl|Mm7|chr10 (8546094-8545692)
               

               
               1-353, gnl|monDom2|scaffold_0 (57868274-57867524)
               

               
               1-353, gnl|oryCun1|scaffold_193008 (57632-56909)
               

               
               1-353, gnl|panTro1|chr5 (152201003-152201735)
               

               
               1-353, gnl|rheMac2|chr4 (114914110-114913380)
               

               
               1-353, gnl|rn3|chr1 (3444733-3444044)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-353, gnl|bosTau2|chr9 (49671089-49671441)
               

               
               1-353, gnl|canFam2|chr1 (42371596-42372321)
               

               
               1-353, gnl|galGal2|chr3 (46643909-46644653)
               

               
               1-353, gnl|hg17|chr6 (148758210-148758937)
               

               
               1-353, gnl|Hg17|chr6 (148758660-148758992)
               

               
               1-353, gnl|loxAfr1|scaffold_12048 (3575-4304)
               

               
               1-353, gnl|mm7|chr10 (8546521-8545783)
               

               
               1-353, gnl|Mm7|chr10 (8546094-8545692)
               

               
               1-353, gnl|monDom2|scaffold_0 (57868274-57867524)
               

               
               1-353, gnl|oryCun1|scaffold_193008 (57632-56909)
               

               
               1-353, gnl|panTro1|chr5 (152201003-152201735)
               

               
               1-353, gnl|rheMac2|chr4 (114914110-114913380)
               

               
               1-353, gnl|rn3|chr1 (3444733-3444044)

	1-90, - strand, RNAz p=0.99783
	148-259, - strand, RNAz p=0.8652

	1-353, gnl\|bosTau2\|chr9 (49671089-49671441)
	1-353, gnl\|canFam2\|chr1 (42371596-42372321)
	1-353, gnl\|galGal2\|chr3 (46643909-46644653)
	1-353, gnl\|hg17\|chr6 (148758210-148758937)
	1-353, gnl\|Hg17\|chr6 (148758660-148758992)
	1-353, gnl\|loxAfr1\|scaffold_12048 (3575-4304)
	1-353, gnl\|mm7\|chr10 (8546521-8545783)
	1-353, gnl\|Mm7\|chr10 (8546094-8545692)
	1-353, gnl\|monDom2\|scaffold_0 (57868274-57867524)
	1-353, gnl\|oryCun1\|scaffold_193008 (57632-56909)
	1-353, gnl\|panTro1\|chr5 (152201003-152201735)
	1-353, gnl\|rheMac2\|chr4 (114914110-114913380)
	1-353, gnl\|rn3\|chr1 (3444733-3444044)