Pig2-97I10
|
GCCATGGGTACCTCGGGGAGCATGGCTCCCTCTTCCAGCAGCCCCTGGATGTCTGCCACT
CCTTCACATCCTCTCAGGNAGGGGGCCGGGAGCCCCTCCCAGCCCCCTACCAACACCAGC
TGTCGGAGCCTTGCCCCCCCTACCCCCAGCAGAGCTTCAAGCAGGAATACCTTGACCCCC
TGTATGAACAGGCCGGCCAGCCAGCAGTGGGTCAGGGTGGAGTCAACGGGCACAGGTACC
CAGGGGCAGGGGTGGTGATCAAACAGGAGCAGACAGACTTCTCCTATGATTCAGGTAAGA
GATGCTCCTGGGAAGGGAGTGGAGGAGTTTGGGTGGGATTGTTGGGTGGGGTGGCATGTG
ATAAAGGGGTTCCATGAAACCCAGAATGTCTCCCCACAAGTTTTTTTTTTTCCCTTTACC
AGTTTCAGCCCACCCACCTACC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GCCATGGGTACCTCGGGGAGCATGGCTCCCTCTTCCAGCAGCCCCTGGATGTCTGCCACT
CCTTCACATCCTCTCAGGNAGGGGGCCGGGAGCCCCTCCCAGCCCCCTACCAACACCAGC
TGTCGGAGCCTTGCCCCCCCTACCCCCAGCAGAGCTTCAAGCAGGAATACCTTGACCCCC
TGTATGAACAGGCCGGCCAGCCAGCAGTGGGTCAGGGTGGAGTCAACGGGCACAGGTACC
CAGGGGCAGGGGTGGTGATCAAACAGGAGCAGACAGACTTCTCCTATGATTCAGGTAAGA
GATGCTCCTGGGAAGGGAGTGGAGGAGTTTGGGTGGGATTGTTGGGTGGGGTGGCATGTG
ATAAAGGGGTTCCATGAAACCCAGAATGTCTCCCCACAAGTTTTTTTTTTTCCCTTTACC
AGTTTCAGCCCACCCACCTACC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
47-142, - strand, RNAmicro p=0.948292 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
47-142, - strand, RNAmicro p=0.948292 |
|
25-183, AL519115 Homo sapiens NEUROBLASTOMA Homo sapiens cDNA clone
(emb|AL519115.3|), blast E-value=2e-34, identity=86.16% |
|
25-183, BX332185 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens
(emb|BX332185.2|), blast E-value=2e-34, identity=86.16% |
|
25-183, zn75h09.r1 Stratagene NT2 neuronal precursor 937230 Homo sapiens
(gb|AA101538.1|), blast E-value=2e-34, identity=86.16% |
|
25-183, 603387769F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BI856405.1|),
blast E-value=2e-34, identity=86.16% |
|
25-183, nad32a01.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris
(gb|DN874281.1|), blast E-value=3e-33, identity=85.53% |
|
25-183, sh2P0018D17_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA,
(gb|DY496192.1|), blast E-value=0, identity=89.94% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
25-183, AL519115 Homo sapiens NEUROBLASTOMA Homo sapiens cDNA clone
(emb|AL519115.3|), blast E-value=2e-34, identity=86.16% |
|
25-183, BX332185 Homo sapiens NEUROBLASTOMA COT 25-NORMALIZED Homo sapiens
(emb|BX332185.2|), blast E-value=2e-34, identity=86.16% |
|
25-183, zn75h09.r1 Stratagene NT2 neuronal precursor 937230 Homo sapiens
(gb|AA101538.1|), blast E-value=2e-34, identity=86.16% |
|
25-183, 603387769F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BI856405.1|),
blast E-value=2e-34, identity=86.16% |
|
25-183, nad32a01.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris
(gb|DN874281.1|), blast E-value=3e-33, identity=85.53% |
|
25-183, sh2P0018D17_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA,
(gb|DY496192.1|), blast E-value=0, identity=89.94% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
