Non-Coding RNA Search

Pig2-98E09

Sequence:


               
               TTAAGGCTAGTGTATTTCACAAAGGACACTAGTAATTTCAAAGGTTTTTAAAGTGATGTT
TGGTGCATTTAAAAAAAAAATAGAGGTTCCATCTGTTACTTTTTATTCCTAACAAAGGGG
GGGGGGAATGGAAATCATTTTGATCAATGTCCTTTTAATTCCTGGACTTGGAAAAAAAAT
AAATCACAGTGTTATGGCAATTCATTTACAGTGGTTAAAGTGGTATGATGGGGTTTTCAC
GGTAACATGGGTTTCACTTGCTGAGCGCCTGGGACTTTGATTTGCCGTATTACCTGCTGT
GGTTGTAAGCGATGCAAAATAATTACTGGGGCTTCCTTGTCACAGTGGCCTATTCCACAC
CTGCACCCTTTTGTTGCCAGCCCAACAGGGATGCTGGATTTGAGTCTCCACTGAATAAAT
GTCCACCCTCTGTAGTCCTCCTCCACTGGATTGATTTATGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGGCTAGTGTATTTCACAAAGGACACTAGTAATTTCAAAGGTTTTTAAAGTGATGTT
TGGTGCATTTAAAAAAAAAATAGAGGTTCCATCTGTTACTTTTTATTCCTAACAAAGGGG
GGGGGGAATGGAAATCATTTTGATCAATGTCCTTTTAATTCCTGGACTTGGAAAAAAAAT
AAATCACAGTGTTATGGCAATTCATTTACAGTGGTTAAAGTGGTATGATGGGGTTTTCAC
GGTAACATGGGTTTCACTTGCTGAGCGCCTGGGACTTTGATTTGCCGTATTACCTGCTGT
GGTTGTAAGCGATGCAAAATAATTACTGGGGCTTCCTTGTCACAGTGGCCTATTCCACAC
CTGCACCCTTTTGTTGCCAGCCCAACAGGGATGCTGGATTTGAGTCTCCACTGAATAAAT
GTCCACCCTCTGTAGTCCTCCTCCACTGGATTGATTTATGGATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               266-384, - strand, RNAz p=0.553315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               266-384, - strand, RNAz p=0.553315

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-464, gnl|bosTau2|chr21 (49672812-49673281)
               

               
               1-464, gnl|canFam2|chr19 (39146405-39146819)
               

               
               1-464, gnl|dasNov1|scaffold_245137 (1419-981)
               

               
               1-464, gnl|galGal2|chr7 (30650574-30650995)
               

               
               1-464, gnl|hg17|chr2 (133767243-133767658)
               

               
               1-464, gnl|Hg17|chr2 (133767790-133767331)
               

               
               1-464, gnl|loxAfr1|scaffold_29946 (9769-9355)
               

               
               1-464, gnl|mm7|chr1 (126315500-126315899)
               

               
               1-464, gnl|Mm7|chr1 (126316021-126315588)
               

               
               1-464, gnl|monDom2|scaffold_2 (18590349-18590762)
               

               
               1-464, gnl|oryCun1|scaffold_129835 (14633-14221)
               

               
               1-464, gnl|panTro1|chr13 (22777997-22778412)
               

               
               1-464, gnl|rheMac2|chr13 (118953574-118953159)
               

               
               1-464, gnl|rn3|chr13 (39000295-39000707)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-464, gnl|bosTau2|chr21 (49672812-49673281)
               

               
               1-464, gnl|canFam2|chr19 (39146405-39146819)
               

               
               1-464, gnl|dasNov1|scaffold_245137 (1419-981)
               

               
               1-464, gnl|galGal2|chr7 (30650574-30650995)
               

               
               1-464, gnl|hg17|chr2 (133767243-133767658)
               

               
               1-464, gnl|Hg17|chr2 (133767790-133767331)
               

               
               1-464, gnl|loxAfr1|scaffold_29946 (9769-9355)
               

               
               1-464, gnl|mm7|chr1 (126315500-126315899)
               

               
               1-464, gnl|Mm7|chr1 (126316021-126315588)
               

               
               1-464, gnl|monDom2|scaffold_2 (18590349-18590762)
               

               
               1-464, gnl|oryCun1|scaffold_129835 (14633-14221)
               

               
               1-464, gnl|panTro1|chr13 (22777997-22778412)
               

               
               1-464, gnl|rheMac2|chr13 (118953574-118953159)
               

               
               1-464, gnl|rn3|chr13 (39000295-39000707)

	1-464, gnl\|bosTau2\|chr21 (49672812-49673281)
	1-464, gnl\|canFam2\|chr19 (39146405-39146819)
	1-464, gnl\|dasNov1\|scaffold_245137 (1419-981)
	1-464, gnl\|galGal2\|chr7 (30650574-30650995)
	1-464, gnl\|hg17\|chr2 (133767243-133767658)
	1-464, gnl\|Hg17\|chr2 (133767790-133767331)
	1-464, gnl\|loxAfr1\|scaffold_29946 (9769-9355)
	1-464, gnl\|mm7\|chr1 (126315500-126315899)
	1-464, gnl\|Mm7\|chr1 (126316021-126315588)
	1-464, gnl\|monDom2\|scaffold_2 (18590349-18590762)
	1-464, gnl\|oryCun1\|scaffold_129835 (14633-14221)
	1-464, gnl\|panTro1\|chr13 (22777997-22778412)
	1-464, gnl\|rheMac2\|chr13 (118953574-118953159)
	1-464, gnl\|rn3\|chr13 (39000295-39000707)