Non-Coding RNA Search

Pig2-98I01

Sequence:


               
               ACGAGGAGACCAGAGAGGAGCTGGCCCGCATCGGACTGGTGCCGCCTCCCGAAGAATTTG
CCAACGGGGTCCTGCTGGCCACCCCCCTCCCTGGCCCAGGTCCCTCGCCCACCACGGTGC
CAGGCCCGGCCTCAGGGAAGCCGAGCAGCGAGCCGCCCCCTGCCCCCGAGTCTGCAGCGG
ATTCGGGGGTGGAGGAGGCCGACACGCGCAGCTCCAGCGACCCCCACCTGGAGACAACGA
GCACCATCTCCACGGTGTCCAGCATGTCCACCCTGAGCTCAGAGAGCGGGGAACTCACCG
ACACCCACACCTCCTTCGGCGACGGACATACTTTTCTACTCGAGAAGCCACCAGTGCCTC
CCAAGCCCAAGCTCAAGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGAGGAGACCAGAGAGGAGCTGGCCCGCATCGGACTGGTGCCGCCTCCCGAAGAATTTG
CCAACGGGGTCCTGCTGGCCACCCCCCTCCCTGGCCCAGGTCCCTCGCCCACCACGGTGC
CAGGCCCGGCCTCAGGGAAGCCGAGCAGCGAGCCGCCCCCTGCCCCCGAGTCTGCAGCGG
ATTCGGGGGTGGAGGAGGCCGACACGCGCAGCTCCAGCGACCCCCACCTGGAGACAACGA
GCACCATCTCCACGGTGTCCAGCATGTCCACCCTGAGCTCAGAGAGCGGGGAACTCACCG
ACACCCACACCTCCTTCGGCGACGGACATACTTTTCTACTCGAGAAGCCACCAGTGCCTC
CCAAGCCCAAGCTCAAGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-380, - strand, RNAz p=0.900572

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-380, - strand, RNAz p=0.900572

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               260-358, - strand, RNAmicro p=0.967326

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               260-358, - strand, RNAmicro p=0.967326

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-380, gnl|bosTau2|chr5 (75598514-75598135)
               

               
               1-380, gnl|Hg17|chr22 (49450286-49450665)
               

               
               1-380, gnl|Mm7|chr15 (89632037-89632416)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-380, gnl|bosTau2|chr5 (75598514-75598135)
               

               
               1-380, gnl|Hg17|chr22 (49450286-49450665)
               

               
               1-380, gnl|Mm7|chr15 (89632037-89632416)

	1-380, gnl\|bosTau2\|chr5 (75598514-75598135)
	1-380, gnl\|Hg17\|chr22 (49450286-49450665)
	1-380, gnl\|Mm7\|chr15 (89632037-89632416)