Non-Coding RNA Search

Pig2-99I16

Sequence:


               
               GTCGTGGCCAATCGGAGGCCACCAAGCTGCGGCGGTAGCCGGCGGGATCCGCGGCAGCCG
CCCGCCCCCGCCCCACCGAAGCGCCCCATTTTTGCTGCAGCCCGAGGGGGGCCGCGGGAG
GGAAACCTGGGGATGTGCAGAGCACTGCCCGGCAGGTGTAGGGGCTGCGGGAAAGAAAAG
AACTTGCGCCGGAACTTGATCGGTGGCAGGTTCATCTTTGGACAGCGATGGGGCATCAGA
TAGATGTTAGGCATTGAAGGGGGAATGCTTTCTTCACAGCCTAACGCACGCTTCGCTTCC
CTTTCTGTTTGGTCATTCTTTCAAGATAGACCGTTTTTCTGGGCAGGGACAGACACAGCA
AACTAGCGACGCGGGCAAAGCCCATGCTGGCCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGTGGCCAATCGGAGGCCACCAAGCTGCGGCGGTAGCCGGCGGGATCCGCGGCAGCCG
CCCGCCCCCGCCCCACCGAAGCGCCCCATTTTTGCTGCAGCCCGAGGGGGGCCGCGGGAG
GGAAACCTGGGGATGTGCAGAGCACTGCCCGGCAGGTGTAGGGGCTGCGGGAAAGAAAAG
AACTTGCGCCGGAACTTGATCGGTGGCAGGTTCATCTTTGGACAGCGATGGGGCATCAGA
TAGATGTTAGGCATTGAAGGGGGAATGCTTTCTTCACAGCCTAACGCACGCTTCGCTTCC
CTTTCTGTTTGGTCATTCTTTCAAGATAGACCGTTTTTCTGGGCAGGGACAGACACAGCA
AACTAGCGACGCGGGCAAAGCCCATGCTGGCCATTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               93-186, - strand, RNAz p=0.727048
               

               
               216-331, + strand, RNAz p=0.997807

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-186, - strand, RNAz p=0.727048
               

               
               216-331, + strand, RNAz p=0.997807

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-396, gnl|bosTau2|chr24 (21924590-21924995)
               

               
               1-396, gnl|canFam2|chr7 (63740281-63739975)
               

               
               1-396, gnl|hg17|chr18 (24011976-24012301)
               

               
               1-396, gnl|Hg17|chr18 (24012022-24012417)
               

               
               1-396, gnl|loxAfr1|scaffold_24693 (1466-1153)
               

               
               1-396, gnl|mm7|chr18 (17169673-17170001)
               

               
               1-396, gnl|Mm7|chr18 (17169716-17170117)
               

               
               1-396, gnl|monDom2|scaffold_21 (45021865-45022199)
               

               
               1-396, gnl|oryCun1|scaffold_212308 (59700-59372)
               

               
               1-396, gnl|panTro1|chr17 (19948834-19949160)
               

               
               1-396, gnl|rn3|chr18 (8263714-8264042)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-396, gnl|bosTau2|chr24 (21924590-21924995)
               

               
               1-396, gnl|canFam2|chr7 (63740281-63739975)
               

               
               1-396, gnl|hg17|chr18 (24011976-24012301)
               

               
               1-396, gnl|Hg17|chr18 (24012022-24012417)
               

               
               1-396, gnl|loxAfr1|scaffold_24693 (1466-1153)
               

               
               1-396, gnl|mm7|chr18 (17169673-17170001)
               

               
               1-396, gnl|Mm7|chr18 (17169716-17170117)
               

               
               1-396, gnl|monDom2|scaffold_21 (45021865-45022199)
               

               
               1-396, gnl|oryCun1|scaffold_212308 (59700-59372)
               

               
               1-396, gnl|panTro1|chr17 (19948834-19949160)
               

               
               1-396, gnl|rn3|chr18 (8263714-8264042)

	93-186, - strand, RNAz p=0.727048
	216-331, + strand, RNAz p=0.997807

	1-396, gnl\|bosTau2\|chr24 (21924590-21924995)
	1-396, gnl\|canFam2\|chr7 (63740281-63739975)
	1-396, gnl\|hg17\|chr18 (24011976-24012301)
	1-396, gnl\|Hg17\|chr18 (24012022-24012417)
	1-396, gnl\|loxAfr1\|scaffold_24693 (1466-1153)
	1-396, gnl\|mm7\|chr18 (17169673-17170001)
	1-396, gnl\|Mm7\|chr18 (17169716-17170117)
	1-396, gnl\|monDom2\|scaffold_21 (45021865-45022199)
	1-396, gnl\|oryCun1\|scaffold_212308 (59700-59372)
	1-396, gnl\|panTro1\|chr17 (19948834-19949160)
	1-396, gnl\|rn3\|chr18 (8263714-8264042)