Non-Coding RNA Search

Pig3-SRG8001F08

Sequence:


               
               TCGCTGTTCATTGTCTTTCTACAAGTTCATTCTAGGAGACTGGCACATACCCAAAATTCT
GACATGAGGAATTTGTGACCTCCCCCTGACATGCTAATCTGTTAACTTTTCAGAAAGGTA
ATGAAAAGTTGATTGGACATGACTGTCCACAAACTTGTCCATACCAGCTTCCAGTGTCCC
TGCCTTCCTTATCTAGATGATGGTGCTTATGTTACCTGCTTCTTTTATATTCAAACCCCC
ACCCACCCCAACCCCCCGGGGCTGGGGTCATTTCCACTCTCCTGGAGGTGATGAAGTCTC
TTCTCAGTTCCATGTGTGGAGGTCTCATTGTGGAGAGGAGTTTTTCTGACTCCTGATACC
ATAAAGACCTTCATCTTTCAGGGAATGGACAGAGCCTGCCTATCTTGTCCTCAGATATTA
GGGTTCACCTCCTCTGGCATTCATTCATACCTGTAATAATCTAAGACAAGGTGGAGTTCA
CGCTGGGGCGCAATGGGATCGGCTGCATCTCTGGAGCCCTGGGATGCAAGTTCAGTCCCC
AGCCTGGCACAGTGGTTAAAGGATCTAGCATTGCTACAGCTGCGATATAGGTTGCAACTG
CAGCTCCGATCTGACCCCTAGCCTGGAAACTCCATGTGTTGCACAGTCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCTGTTCATTGTCTTTCTACAAGTTCATTCTAGGAGACTGGCACATACCCAAAATTCT
GACATGAGGAATTTGTGACCTCCCCCTGACATGCTAATCTGTTAACTTTTCAGAAAGGTA
ATGAAAAGTTGATTGGACATGACTGTCCACAAACTTGTCCATACCAGCTTCCAGTGTCCC
TGCCTTCCTTATCTAGATGATGGTGCTTATGTTACCTGCTTCTTTTATATTCAAACCCCC
ACCCACCCCAACCCCCCGGGGCTGGGGTCATTTCCACTCTCCTGGAGGTGATGAAGTCTC
TTCTCAGTTCCATGTGTGGAGGTCTCATTGTGGAGAGGAGTTTTTCTGACTCCTGATACC
ATAAAGACCTTCATCTTTCAGGGAATGGACAGAGCCTGCCTATCTTGTCCTCAGATATTA
GGGTTCACCTCCTCTGGCATTCATTCATACCTGTAATAATCTAAGACAAGGTGGAGTTCA
CGCTGGGGCGCAATGGGATCGGCTGCATCTCTGGAGCCCTGGGATGCAAGTTCAGTCCCC
AGCCTGGCACAGTGGTTAAAGGATCTAGCATTGCTACAGCTGCGATATAGGTTGCAACTG
CAGCTCCGATCTGACCCCTAGCCTGGAAACTCCATGTGTTGCACAGTCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               333-439, + strand, RNAz p=0.521493

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-439, + strand, RNAz p=0.521493

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               51-229, gnl|bosTau2|chr25 (13995022-13994847)
               


               
               253-470, gnl|bosTau2|chr25 (13994843-13994620)
               

               
               253-470, gnl|Hg17|chrX (52904669-52904442)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-229, gnl|bosTau2|chr25 (13995022-13994847)
               


               
               253-470, gnl|bosTau2|chr25 (13994843-13994620)
               

               
               253-470, gnl|Hg17|chrX (52904669-52904442)

	51-229, gnl\|bosTau2\|chr25 (13995022-13994847)

	253-470, gnl\|bosTau2\|chr25 (13994843-13994620)
	253-470, gnl\|Hg17\|chrX (52904669-52904442)