Pig3-SRG8001N07
|
AACAGACTCCCAAAAGGGAAAGCTCTATAAATTCAATAAAAAAGGAAACCAGTGTGTTTC
GGAAAGGCCTGGACTTCAAGGAGCAGGTGGCTGAGGAGACAGATGGTGACAGCCGGGCTA
GGAATTTGGCTGATGACAGCAGTGAAAACAAAGTGGAAAATTTGCTCTGGGTGGATAAAT
ATAAGCCAGCCTCGCTCAAGACCATAATTGGACAGCAAGGTGACCAGAGCTGTGCCAACA
AACTCCTACGCTGGCTCCAAAACTGGCACAAGAGTCCATCCGAAGATAAGAAACGCGCAG
CAAAATTTGGTAAATTTGCTGGCAAAGATGATGGCTCCAGTTTTAAAGCTGCATTGCTCT
CAGGCCCTCCAGGTGTTGGCAAAACCACCACAGCTTCTCTGGTTTGTCAGGAATTGGGAT
ATAGCTATGTGGAACTGAATGCAAGTGACACTCGGAGTAAGAACAGTTTGAAGGAGATTA
TTGCTGAGTCGCTGAATAATACCAGCATCAAAGGCTTTTATTCAAGTGGAGCAGCCCATT
CAGTAAGCACGAAACATGCTCTCATCATGGATGAAGTAGATGGCATGGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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AACAGACTCCCAAAAGGGAAAGCTCTATAAATTCAATAAAAAAGGAAACCAGTGTGTTTC
GGAAAGGCCTGGACTTCAAGGAGCAGGTGGCTGAGGAGACAGATGGTGACAGCCGGGCTA
GGAATTTGGCTGATGACAGCAGTGAAAACAAAGTGGAAAATTTGCTCTGGGTGGATAAAT
ATAAGCCAGCCTCGCTCAAGACCATAATTGGACAGCAAGGTGACCAGAGCTGTGCCAACA
AACTCCTACGCTGGCTCCAAAACTGGCACAAGAGTCCATCCGAAGATAAGAAACGCGCAG
CAAAATTTGGTAAATTTGCTGGCAAAGATGATGGCTCCAGTTTTAAAGCTGCATTGCTCT
CAGGCCCTCCAGGTGTTGGCAAAACCACCACAGCTTCTCTGGTTTGTCAGGAATTGGGAT
ATAGCTATGTGGAACTGAATGCAAGTGACACTCGGAGTAAGAACAGTTTGAAGGAGATTA
TTGCTGAGTCGCTGAATAATACCAGCATCAAAGGCTTTTATTCAAGTGGAGCAGCCCATT
CAGTAAGCACGAAACATGCTCTCATCATGGATGAAGTAGATGGCATGGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-297, gnl|bosTau2|chr6 (32093974-32093678) |
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1-297, gnl|Hg17|chr4 (39133118-39132822) |
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1-297, gnl|Mm7|chr5 (64634522-64634268) |
| |
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403-527, gnl|bosTau2|chr6 (32090318-32090193) |
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403-527, gnl|canFam2|chr3 (75948511-75948382) |
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403-527, gnl|danRer3|chr1 (21438992-21438865) |
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403-527, gnl|fr1|chrUn (233990650-233990768) |
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403-527, gnl|galGal2|chr4 (69704135-69704264) |
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403-527, gnl|hg17|chr4 (39128988-39129117) |
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403-527, gnl|Hg17|chr4 (39129123-39128998) |
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403-527, gnl|loxAfr1|scaffold_16015 (3027-2896) |
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403-527, gnl|mm7|chr5 (64632156-64632285) |
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403-527, gnl|Mm7|chr5 (64632291-64632166) |
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403-527, gnl|monDom2|scaffold_26 (4424168-4424297) |
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403-527, gnl|panTro1|chr3 (41815703-41815832) |
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403-527, gnl|rheMac2|chr5 (34267272-34267401) |
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403-527, gnl|rn3|chr14 (45728458-45728329) |
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403-527, gnl|tetNig1|chrUn_random (51260755-51260884) |
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403-527, gnl|xenTro1|scaffold_84 (2131449-2131341) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-297, gnl|bosTau2|chr6 (32093974-32093678) |
|
1-297, gnl|Hg17|chr4 (39133118-39132822) |
|
1-297, gnl|Mm7|chr5 (64634522-64634268) |
| |
|
403-527, gnl|bosTau2|chr6 (32090318-32090193) |
|
403-527, gnl|canFam2|chr3 (75948511-75948382) |
|
403-527, gnl|danRer3|chr1 (21438992-21438865) |
|
403-527, gnl|fr1|chrUn (233990650-233990768) |
|
403-527, gnl|galGal2|chr4 (69704135-69704264) |
|
403-527, gnl|hg17|chr4 (39128988-39129117) |
|
403-527, gnl|Hg17|chr4 (39129123-39128998) |
|
403-527, gnl|loxAfr1|scaffold_16015 (3027-2896) |
|
403-527, gnl|mm7|chr5 (64632156-64632285) |
|
403-527, gnl|Mm7|chr5 (64632291-64632166) |
|
403-527, gnl|monDom2|scaffold_26 (4424168-4424297) |
|
403-527, gnl|panTro1|chr3 (41815703-41815832) |
|
403-527, gnl|rheMac2|chr5 (34267272-34267401) |
|
403-527, gnl|rn3|chr14 (45728458-45728329) |
|
403-527, gnl|tetNig1|chrUn_random (51260755-51260884) |
|
403-527, gnl|xenTro1|scaffold_84 (2131449-2131341) |
