Pig3-SRG8002K01
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CCCATTTTTACCCCCATTCTTGTGGGTAGGAAGGGGTTTGCAGGCCCAGCGGTTGTTCCC
TTGTTTTGTATTTCTTGGCCCTTGGGTTTCATTCCCAGATTTTTTCTTTCCCCTCCACAG
CCAAAGGTTGTGACAAAACCATTCCTTGGCCAAGGGCATCATTCTTCAGGCGGATCCCCA
GTTCTTGGGGGGTGCCCCTTGACCAATGGCAGGGCTTCAAAAGGCCTTTTCACCCAATGG
CAGTTTTTTTCAGGTTCCCTTGGGCCAATAATGTTCCCTCCAGACCCTTTTGTCCCTCCT
CAAGGGGTGCCCATTCAAAAAAAGGGGATTGGGCCCAAAGGGGTGGGAATGGGGGACCCT
CTTTTTCCGGCCCTGAATTTGAAGGGGTTTCCCCTCCCCCCCCCCCCCAGTTTAATTGTG
TTTAAACCCTTGAAAAATGGGGCCCTACCCTTAGGAATAACCCTTTCTTAAAAGCaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaa
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CCCATTTTTACCCCCATTCTTGTGGGTAGGAAGGGGTTTGCAGGCCCAGCGGTTGTTCCC
TTGTTTTGTATTTCTTGGCCCTTGGGTTTCATTCCCAGATTTTTTCTTTCCCCTCCACAG
CCAAAGGTTGTGACAAAACCATTCCTTGGCCAAGGGCATCATTCTTCAGGCGGATCCCCA
GTTCTTGGGGGGTGCCCCTTGACCAATGGCAGGGCTTCAAAAGGCCTTTTCACCCAATGG
CAGTTTTTTTCAGGTTCCCTTGGGCCAATAATGTTCCCTCCAGACCCTTTTGTCCCTCCT
CAAGGGGTGCCCATTCAAAAAAAGGGGATTGGGCCCAAAGGGGTGGGAATGGGGGACCCT
CTTTTTCCGGCCCTGAATTTGAAGGGGTTTCCCCTCCCCCCCCCCCCCAGTTTAATTGTG
TTTAAACCCTTGAAAAATGGGGCCCTACCCTTAGGAATAACCCTTTCTTAAAAGCaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaa
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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251-356, - strand, RNAmicro p=0.971987 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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251-356, - strand, RNAmicro p=0.971987 |
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33-395, DB818854 full-length enriched swine cDNA library, adult thymus Sus
(dbj|DB818854.1|), blast E-value=0, identity=82.64% |
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83-315, 4098457 BARC 10BOV Bos taurus cDNA clone 10BOV4_O24 3', mRNA
(gb|CK957895.1|), blast E-value=1e-35, identity=82.83% |
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83-315, 4079698 BARC 9BOV Bos taurus cDNA clone 9BOV18_B11 3', mRNA
(gb|CK965008.1|), blast E-value=2e-40, identity=83.69% |
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83-315, 4106823 BARC 9BOV Bos taurus cDNA clone 9BOV33_L14 3', mRNA
(gb|CK975793.1|), blast E-value=5e-38, identity=83.26% |
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113-395, UMC-pd10en3-019-a07 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO987652.1|), blast E-value=1.4013e-45, identity=82.69% |
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83-315, sh2P0024A21_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA,
(gb|DY497866.1|), blast E-value=3e-33, identity=82.4% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
33-395, DB818854 full-length enriched swine cDNA library, adult thymus Sus
(dbj|DB818854.1|), blast E-value=0, identity=82.64% |
|
83-315, 4098457 BARC 10BOV Bos taurus cDNA clone 10BOV4_O24 3', mRNA
(gb|CK957895.1|), blast E-value=1e-35, identity=82.83% |
|
83-315, 4079698 BARC 9BOV Bos taurus cDNA clone 9BOV18_B11 3', mRNA
(gb|CK965008.1|), blast E-value=2e-40, identity=83.69% |
|
83-315, 4106823 BARC 9BOV Bos taurus cDNA clone 9BOV33_L14 3', mRNA
(gb|CK975793.1|), blast E-value=5e-38, identity=83.26% |
|
113-395, UMC-pd10en3-019-a07 Endometrium gilt D10 of estrous cycle pd10en
(gb|CO987652.1|), blast E-value=1.4013e-45, identity=82.69% |
|
83-315, sh2P0024A21_F.ab1 adult sheep fracture callus 7d Ovis aries cDNA,
(gb|DY497866.1|), blast E-value=3e-33, identity=82.4% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
