Non-Coding RNA Search

Pig3-SRG8004E17

Sequence:


               
               TGTGTGTGTATATGTTACAGGTGGTATGTAAGCATATGTGGGCTTGGAAAAGACATGCGT
GCCATGGGCTATTGGGCCTCGGCAGGGGGGTCAGGAACTCCCACCCTTAGCCTGGCTTTT
GCTAGGAAAACTTCCAGGGGTCCCGACACCTTGGCATGCAGCATCTCAAGAGATTGTGTG
CCCATCAGTCCAGCCTCCGAGAGATGGTAGATCCTCAATGCCAAGGACCTACTGCGTGTG
AGGTTCAGAATCCCCTGGCAGTTTGAGAGCTCCCCCTGTGTGGGGACTACTAGGGCCCCA
AAGATGAGCCAGGGGCTCAGAGAAGTCACAATGGAGAGGGGTTCGATGAACAAGGTCCTC
CAAGCAGGAGGTCCCCAGCTGTCCTGGGCAACCTCTGTGGGCAGCGCCTGCTCCTGGGCC
CCATTGGAAGACCCATTCATATGTTCCATCTTCCTTCAATAATATTTGTTTTCTCACTTG
ATTTCGGACTTTGCCGTTCTTTCTTATGTGTGTGTGTGGTAAAATATGCATAACTTAAAA
TTTAACATTTTTAgggggtcctcttgtggtacagcgggttaaggatccagcgttgtcact
gaagtggctgaggtcgatgctgtggtacaggtttgatctgtggcctgggaattgcacatg
ccgtggacacagccaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTGTGTATATGTTACAGGTGGTATGTAAGCATATGTGGGCTTGGAAAAGACATGCGT
GCCATGGGCTATTGGGCCTCGGCAGGGGGGTCAGGAACTCCCACCCTTAGCCTGGCTTTT
GCTAGGAAAACTTCCAGGGGTCCCGACACCTTGGCATGCAGCATCTCAAGAGATTGTGTG
CCCATCAGTCCAGCCTCCGAGAGATGGTAGATCCTCAATGCCAAGGACCTACTGCGTGTG
AGGTTCAGAATCCCCTGGCAGTTTGAGAGCTCCCCCTGTGTGGGGACTACTAGGGCCCCA
AAGATGAGCCAGGGGCTCAGAGAAGTCACAATGGAGAGGGGTTCGATGAACAAGGTCCTC
CAAGCAGGAGGTCCCCAGCTGTCCTGGGCAACCTCTGTGGGCAGCGCCTGCTCCTGGGCC
CCATTGGAAGACCCATTCATATGTTCCATCTTCCTTCAATAATATTTGTTTTCTCACTTG
ATTTCGGACTTTGCCGTTCTTTCTTATGTGTGTGTGTGGTAAAATATGCATAACTTAAAA
TTTAACATTTTTAgggggtcctcttgtggtacagcgggttaaggatccagcgttgtcact
gaagtggctgaggtcgatgctgtggtacaggtttgatctgtggcctgggaattgcacatg
ccgtggacacagccaaaaa

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               95-209, - strand, RNAz p=0.638204

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-209, - strand, RNAz p=0.638204

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               1-209, gnl|bosTau2|chr19 (32883809-32884016)
               

               
               1-209, gnl|canFam2|chr9 (27065648-27065500)
               

               
               1-209, gnl|hg17|chr17 (33854164-33854312)
               

               
               1-209, gnl|mm7|chr11 (97541230-97541369)
               

               
               1-209, gnl|oryCun1|scaffold_68750 (6810-6647)
               

               
               1-209, gnl|panTro1|chr19 (37066718-37066866)
               

               
               1-209, gnl|rheMac2|chr16 (48464374-48464522)
               

               
               1-209, gnl|rn3|chr10 (86188028-86188169)
               


               
               231-553, gnl|bosTau2|chr19 (32884394-32884707)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-209, gnl|bosTau2|chr19 (32883809-32884016)
               

               
               1-209, gnl|canFam2|chr9 (27065648-27065500)
               

               
               1-209, gnl|hg17|chr17 (33854164-33854312)
               

               
               1-209, gnl|mm7|chr11 (97541230-97541369)
               

               
               1-209, gnl|oryCun1|scaffold_68750 (6810-6647)
               

               
               1-209, gnl|panTro1|chr19 (37066718-37066866)
               

               
               1-209, gnl|rheMac2|chr16 (48464374-48464522)
               

               
               1-209, gnl|rn3|chr10 (86188028-86188169)
               


               
               231-553, gnl|bosTau2|chr19 (32884394-32884707)

	1-209, gnl\|bosTau2\|chr19 (32883809-32884016)
	1-209, gnl\|canFam2\|chr9 (27065648-27065500)
	1-209, gnl\|hg17\|chr17 (33854164-33854312)
	1-209, gnl\|mm7\|chr11 (97541230-97541369)
	1-209, gnl\|oryCun1\|scaffold_68750 (6810-6647)
	1-209, gnl\|panTro1\|chr19 (37066718-37066866)
	1-209, gnl\|rheMac2\|chr16 (48464374-48464522)
	1-209, gnl\|rn3\|chr10 (86188028-86188169)

	231-553, gnl\|bosTau2\|chr19 (32884394-32884707)