Non-Coding RNA Search

Pig3-SRG8005B17

Sequence:


               
               CCCCAGTCTGGATGGCAGGGCTGCCACTTCCTGCCCCCATCCTTGTTGGGACCCGCAGAG
CCATGGAGTCTTGATTCTGTCCTTTTCTGCCAGGACCCAGGGCCCATGTGCTCTCTGGAG
CCTCCCTGTGCTCTTGCCAGGTGTCTGGCCCCCTCAACCCAGTCCTCAGTTCCCTCACTT
GCACCTGCCCTCTGCCACCAACCCCAGCCCATGGACGTGCTGCTGTCCACGCCCAACCAA
CCAGGAAACCCACAAGTGATGATGCTAATGGCATCCATGGTGCTGACTGCCCTTTTCTCC
TGCTGTAGCCTCGGGCCCAGAGCCAGCACGCGACATCCGCTGTGAGTTCTGCGGCGAGTT
CTTCGAGAACCGAAAGGGCCTATCGAGCCATGCACGCTCCCACCTGCGGCAGATGGGCGT
GACTGAGTGGTACGTCAACGGCTCACCCATCGACACGCTGCGGGAGATCCTCAAGAGACG
GACCCAGTCCCGGCCTGGCGGACCCCCCAACCCGTCAGGGCCTATCCCAAAAGCCCTGGC
CAANGTAGTGGGCAGCGGATGTCCTGGCATCTCGCTGGAAGCCCGCAGCCCTGCAGACCT
TCACCTTTCACCCCTGGCCAAGAAGTTGCCGCCGCCACCAGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCAGTCTGGATGGCAGGGCTGCCACTTCCTGCCCCCATCCTTGTTGGGACCCGCAGAG
CCATGGAGTCTTGATTCTGTCCTTTTCTGCCAGGACCCAGGGCCCATGTGCTCTCTGGAG
CCTCCCTGTGCTCTTGCCAGGTGTCTGGCCCCCTCAACCCAGTCCTCAGTTCCCTCACTT
GCACCTGCCCTCTGCCACCAACCCCAGCCCATGGACGTGCTGCTGTCCACGCCCAACCAA
CCAGGAAACCCACAAGTGATGATGCTAATGGCATCCATGGTGCTGACTGCCCTTTTCTCC
TGCTGTAGCCTCGGGCCCAGAGCCAGCACGCGACATCCGCTGTGAGTTCTGCGGCGAGTT
CTTCGAGAACCGAAAGGGCCTATCGAGCCATGCACGCTCCCACCTGCGGCAGATGGGCGT
GACTGAGTGGTACGTCAACGGCTCACCCATCGACACGCTGCGGGAGATCCTCAAGAGACG
GACCCAGTCCCGGCCTGGCGGACCCCCCAACCCGTCAGGGCCTATCCCAAAAGCCCTGGC
CAANGTAGTGGGCAGCGGATGTCCTGGCATCTCGCTGGAAGCCCGCAGCCCTGCAGACCT
TCACCTTTCACCCCTGGCCAAGAAGTTGCCGCCGCCACCAGGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-180, - strand, RNAz p=0.999138
               

               
               453-572, - strand, RNAz p=0.5993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-180, - strand, RNAz p=0.999138
               

               
               453-572, - strand, RNAz p=0.5993

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               406-495, - strand, RNAmicro p=0.995243

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               406-495, - strand, RNAmicro p=0.995243

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-644, gnl|bosTau2|chr7 (6901679-6902326)
               

               
               1-644, gnl|Hg17|chr19 (15399664-15399009)
               

               
               1-644, gnl|Mm7|chr17 (30554619-30554020)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-644, gnl|bosTau2|chr7 (6901679-6902326)
               

               
               1-644, gnl|Hg17|chr19 (15399664-15399009)
               

               
               1-644, gnl|Mm7|chr17 (30554619-30554020)

	1-180, - strand, RNAz p=0.999138
	453-572, - strand, RNAz p=0.5993

	1-644, gnl\|bosTau2\|chr7 (6901679-6902326)
	1-644, gnl\|Hg17\|chr19 (15399664-15399009)
	1-644, gnl\|Mm7\|chr17 (30554619-30554020)