Non-Coding RNA Search

Pig3-SRG8005C12

Sequence:


               
               CGTGAGAGGGCTCGGCTGGACTTCCCTACGGAGCCGGCGGCGGAGCATGTCCCGGTGACC
CGGCCGGGAGGGTTCCGAGCGCTCGGCAGCATGGCTTCCCCGCCCCACCATCAGTTGCTG
CAGCACCACAGCACCGAGGTGAGTTGTGACTCGATCTGATACAGCAACAGCGTGAGGGTC
AAAATCAACCCCAAGCAGCTGTCCTCCAACAGCCACCCCAAACACTGCAAGTACAGCATC
TCCTCCATCTGTATCATCTCGGGGGACTCGGGAGGGGTCCCCCGGATAATGGGCGCCAGA
TGCCGCCTGCGCATGCGGAATAATCTGCCCCATCTGTTCGAGATGGCCTCCATCCGCTGG
TGGGACCCCAAGTTCGACTCGGTGAACCTGGAGGATGCCTGCATGGATCGCTGCTTCCCC
CATACTCATCGCCGCTTCCGGTACGCGCTCTTCTACATCGGCTTCGCCTGCCTTCTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGAGAGGGCTCGGCTGGACTTCCCTACGGAGCCGGCGGCGGAGCATGTCCCGGTGACC
CGGCCGGGAGGGTTCCGAGCGCTCGGCAGCATGGCTTCCCCGCCCCACCATCAGTTGCTG
CAGCACCACAGCACCGAGGTGAGTTGTGACTCGATCTGATACAGCAACAGCGTGAGGGTC
AAAATCAACCCCAAGCAGCTGTCCTCCAACAGCCACCCCAAACACTGCAAGTACAGCATC
TCCTCCATCTGTATCATCTCGGGGGACTCGGGAGGGGTCCCCCGGATAATGGGCGCCAGA
TGCCGCCTGCGCATGCGGAATAATCTGCCCCATCTGTTCGAGATGGCCTCCATCCGCTGG
TGGGACCCCAAGTTCGACTCGGTGAACCTGGAGGATGCCTGCATGGATCGCTGCTTCCCC
CATACTCATCGCCGCTTCCGGTACGCGCTCTTCTACATCGGCTTCGCCTGCCTTCTCTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               113-352, - strand, RNAz p=0.834971

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-352, - strand, RNAz p=0.834971

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               108-283, - strand, RNAmicro p=0.909659

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               108-283, - strand, RNAmicro p=0.909659

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-480, gnl|bosTau2|chr25 (4137945-4137540)
               

               
               73-480, gnl|Hg17|chr16 (4105456-4105055)
               

               
               73-480, gnl|Mm7|chr16 (4091122-4090721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-480, gnl|bosTau2|chr25 (4137945-4137540)
               

               
               73-480, gnl|Hg17|chr16 (4105456-4105055)
               

               
               73-480, gnl|Mm7|chr16 (4091122-4090721)

	73-480, gnl\|bosTau2\|chr25 (4137945-4137540)
	73-480, gnl\|Hg17\|chr16 (4105456-4105055)
	73-480, gnl\|Mm7\|chr16 (4091122-4090721)