Non-Coding RNA Search

Pig3-SRG8005F09

Sequence:


               
               CCCACTACTTTGTGAAGATCGGCTCCGCCGACGGTGACCTGCTCACGCTGGGCACCACCA
TTGGCCGCAAGGTGCTGGAGAACGGGGTGAACGTGACCGTGTCGCAGCCCACGCTGCTGG
TCAACGGCAGGACTCGAAGGTTCACCAACATCGAGTTCCAGTACTCCACGCTGCTGCTCA
GCATCCGCTACGGCCTCACCCCCGACAGCCTGGACGAAGAGAAGGCCCGCGTCCTGGACC
AGGCCAGGCAGAGGGCCCTGGGCACCGCCTGGGCCAAGGAGCAGCAGAAAGCCAGGGACG
GCAGATAGGGCAGCCGCCTGTGGACCGAGGGCGAGAAGCAGCAGCTCCTGAGCACGGGGC
GCGTGCAAGGCTACGATGGCTACTACGTGCTCCCCGTGGAGCAGTACCCGGAGCTTGCAG
ACAGTAGCAGCAACATCCAGTTCTTAAGACAGAATGAGATGGGAAAGATGTAACAACATC
ATCTGCTGCCATTCCTCGTCTGGATGGCTCGGCGGGAGTAACTGTTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACTACTTTGTGAAGATCGGCTCCGCCGACGGTGACCTGCTCACGCTGGGCACCACCA
TTGGCCGCAAGGTGCTGGAGAACGGGGTGAACGTGACCGTGTCGCAGCCCACGCTGCTGG
TCAACGGCAGGACTCGAAGGTTCACCAACATCGAGTTCCAGTACTCCACGCTGCTGCTCA
GCATCCGCTACGGCCTCACCCCCGACAGCCTGGACGAAGAGAAGGCCCGCGTCCTGGACC
AGGCCAGGCAGAGGGCCCTGGGCACCGCCTGGGCCAAGGAGCAGCAGAAAGCCAGGGACG
GCAGATAGGGCAGCCGCCTGTGGACCGAGGGCGAGAAGCAGCAGCTCCTGAGCACGGGGC
GCGTGCAAGGCTACGATGGCTACTACGTGCTCCCCGTGGAGCAGTACCCGGAGCTTGCAG
ACAGTAGCAGCAACATCCAGTTCTTAAGACAGAATGAGATGGGAAAGATGTAACAACATC
ATCTGCTGCCATTCCTCGTCTGGATGGCTCGGCGGGAGTAACTGTTATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|12848348|dbj|BAB27919.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|12848348|dbj|BAB27919.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               42-161, - strand, RNAz p=0.608756

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-161, - strand, RNAz p=0.608756

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-475, gnl|bosTau2|chr29 (13510070-13509605)
               

               
               1-475, gnl|Hg17|chr11 (78047214-78046749)
               

               
               1-475, gnl|Mm7|chr7 (92937552-92938017)
               


               
               3-474, gnl|bosTau2|chr27 (7100523-7100985)
               

               
               3-474, gnl|Hg17|chr4 (184096192-184096654)
               

               
               3-474, gnl|Mm7|chr8 (47002612-47002150)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-475, gnl|bosTau2|chr29 (13510070-13509605)
               

               
               1-475, gnl|Hg17|chr11 (78047214-78046749)
               

               
               1-475, gnl|Mm7|chr7 (92937552-92938017)
               


               
               3-474, gnl|bosTau2|chr27 (7100523-7100985)
               

               
               3-474, gnl|Hg17|chr4 (184096192-184096654)
               

               
               3-474, gnl|Mm7|chr8 (47002612-47002150)

	1-475, gnl\|bosTau2\|chr29 (13510070-13509605)
	1-475, gnl\|Hg17\|chr11 (78047214-78046749)
	1-475, gnl\|Mm7\|chr7 (92937552-92938017)

	3-474, gnl\|bosTau2\|chr27 (7100523-7100985)
	3-474, gnl\|Hg17\|chr4 (184096192-184096654)
	3-474, gnl\|Mm7\|chr8 (47002612-47002150)