Non-Coding RNA Search

Pig3-SRG8005H10

Sequence:


               
               CGACGCTCGCCCTCCCCTCCCCCCGCTCTTTCTATCTTGGGGGAGGGGGGCTGTCGCCTC
GGATTGAAGGCCATTGATTTGTATGTATTTGTCCCAGCGCCGGATGCTGCCCCAGCCGCC
CGCGCGGGTGCCGCCGCCGCCGCCAGTGGAGTTGCCTCCCTGCTTCCCTATAGTGGTTGA
GCTCCACCAAACATGTCGGCTCCTGTCGGGCCGCGGGGCCGCCCGGCTCCCAACCCGGCG
GCCTCTCATACGCCTCTGCAGCCTGAGATGCCGGACCTCATCCACCTCACGGAGGATGAG
AGGAAAATCATCCTGGCCGTCATGGATCGGCAGAAGAAAGAAGATGAGAAGGAGCAATCG
GTGCTCAAGGTCAAAGAAGAACACAAACCACAACCGACACAGTAAGTAAACCTGTTAAGA
GTTCAGTAAGCTTGACTTCTGTACCTTTGCCACATTCTGCTTTCTGCACCTTGGATGGTA
TTAGCTTACACTAATACTGGATAGGCTGCAGCTAGTGTGTCTTTGCTTTCTGACTCTCTG
GCTTGTAAGATAGCTGCCTGCAGCTTCTTACTTCATCCACATACTGACTGGATGTAGTTT
TTTTGCTGCCTGCTTGTGGACTGGTTAAGTGTTCAAACTTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACGCTCGCCCTCCCCTCCCCCCGCTCTTTCTATCTTGGGGGAGGGGGGCTGTCGCCTC
GGATTGAAGGCCATTGATTTGTATGTATTTGTCCCAGCGCCGGATGCTGCCCCAGCCGCC
CGCGCGGGTGCCGCCGCCGCCGCCAGTGGAGTTGCCTCCCTGCTTCCCTATAGTGGTTGA
GCTCCACCAAACATGTCGGCTCCTGTCGGGCCGCGGGGCCGCCCGGCTCCCAACCCGGCG
GCCTCTCATACGCCTCTGCAGCCTGAGATGCCGGACCTCATCCACCTCACGGAGGATGAG
AGGAAAATCATCCTGGCCGTCATGGATCGGCAGAAGAAAGAAGATGAGAAGGAGCAATCG
GTGCTCAAGGTCAAAGAAGAACACAAACCACAACCGACACAGTAAGTAAACCTGTTAAGA
GTTCAGTAAGCTTGACTTCTGTACCTTTGCCACATTCTGCTTTCTGCACCTTGGATGGTA
TTAGCTTACACTAATACTGGATAGGCTGCAGCTAGTGTGTCTTTGCTTTCTGACTCTCTG
GCTTGTAAGATAGCTGCCTGCAGCTTCTTACTTCATCCACATACTGACTGGATGTAGTTT
TTTTGCTGCCTGCTTGTGGACTGGTTAAGTGTTCAAACTTAATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               10-126, - strand, RNAz p=0.94479
               

               
               167-369, - strand, RNAz p=0.923108

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-126, - strand, RNAz p=0.94479
               

               
               167-369, - strand, RNAz p=0.923108

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               265-362, - strand, RNAmicro p=0.957772

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               265-362, - strand, RNAmicro p=0.957772

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-369, gnl|bosTau2|chrX (43746050-43746411)
               

               
               10-369, gnl|Hg17|chr8 (104582122-104582467)
               

               
               10-369, gnl|Mm7|chr15 (39203641-39203990)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-369, gnl|bosTau2|chrX (43746050-43746411)
               

               
               10-369, gnl|Hg17|chr8 (104582122-104582467)
               

               
               10-369, gnl|Mm7|chr15 (39203641-39203990)

	10-126, - strand, RNAz p=0.94479
	167-369, - strand, RNAz p=0.923108

	10-369, gnl\|bosTau2\|chrX (43746050-43746411)
	10-369, gnl\|Hg17\|chr8 (104582122-104582467)
	10-369, gnl\|Mm7\|chr15 (39203641-39203990)