Non-Coding RNA Search

Pig3-SRG8005I11

Sequence:


               
               GCACCATAAACACCTGCAGCCAAGGGCTGAGGTCAGTAAGATCCTAAAAAGCCTTGAAGG
CCTTAAGTGGATATTTTGGATTTATATTCTAAGAGCAATGGAAAGTAACCCTCTTTCAAA
ATGCAATGTGGTATAATTGGAGTTTTGCTTTTTAAACAGTACAGTTTATCTGCTCTCTGT
GAAAATGAATGATGGGAACAGATGCATGGAGATGAAATGGGAAGAAATGAGACAAGTTTA
TCAAGGATTGTTGGTACCCTGCAACAAAACGTTGTAGTGGAAACTGAAGCATGTGAAAGG
ATTTCAGTGATGTGCAGCAGGTAAAATTTACCAACTTTGAGAGTCATTCATTAACGCAGA
AACACTGTGCAGGTACTGTGTGCTAAGTACACAGATCAGTAAAGGAACAAATAAACATGA
CAGATTCTGAAATAATTCAAAATTAACTGACAGATTAACTGACATTGCAGTCACATTTAA
ACAGAGAGCAGCATGAACCATGGGTGGAAATTTTACCCCCCATAAAAAGCTAAGGTTTAA
AAGTTACAACACCATAATATATATATTGTTGTTTGTACACAATCTACTTACTTCCCCCAG
ATACTTTTTCATACCGTTTATATTTTAAAAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCATAAACACCTGCAGCCAAGGGCTGAGGTCAGTAAGATCCTAAAAAGCCTTGAAGG
CCTTAAGTGGATATTTTGGATTTATATTCTAAGAGCAATGGAAAGTAACCCTCTTTCAAA
ATGCAATGTGGTATAATTGGAGTTTTGCTTTTTAAACAGTACAGTTTATCTGCTCTCTGT
GAAAATGAATGATGGGAACAGATGCATGGAGATGAAATGGGAAGAAATGAGACAAGTTTA
TCAAGGATTGTTGGTACCCTGCAACAAAACGTTGTAGTGGAAACTGAAGCATGTGAAAGG
ATTTCAGTGATGTGCAGCAGGTAAAATTTACCAACTTTGAGAGTCATTCATTAACGCAGA
AACACTGTGCAGGTACTGTGTGCTAAGTACACAGATCAGTAAAGGAACAAATAAACATGA
CAGATTCTGAAATAATTCAAAATTAACTGACAGATTAACTGACATTGCAGTCACATTTAA
ACAGAGAGCAGCATGAACCATGGGTGGAAATTTTACCCCCCATAAAAAGCTAAGGTTTAA
AAGTTACAACACCATAATATATATATTGTTGTTTGTACACAATCTACTTACTTCCCCCAG
ATACTTTTTCATACCGTTTATATTTTAAAAATTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               219-336, + strand, RNAz p=0.666636

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-336, + strand, RNAz p=0.666636

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               140-371, gnl|bosTau2|chr28 (8516731-8516501)
               

               
               140-371, gnl|Hg17|chr10 (43215041-43215234)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-371, gnl|bosTau2|chr28 (8516731-8516501)
               

               
               140-371, gnl|Hg17|chr10 (43215041-43215234)

	140-371, gnl\|bosTau2\|chr28 (8516731-8516501)
	140-371, gnl\|Hg17\|chr10 (43215041-43215234)